Results 81 - 100 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13971 | 3' | -51.8 | NC_003521.1 | + | 70051 | 0.69 | 0.978006 |
Target: 5'- gGGCGccaaGACGUUCgAGGUGCauuCCAUGGc -3' miRNA: 3'- gCCGU----UUGCAAGgUUCGUGc--GGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 180636 | 0.69 | 0.978006 |
Target: 5'- aCGGCGcGCGUUCU---CACGCCGcGGc -3' miRNA: 3'- -GCCGUuUGCAAGGuucGUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 119980 | 0.69 | 0.978006 |
Target: 5'- gGGCGucGACGagCCGGGCgacauGCGCCGcUGGc -3' miRNA: 3'- gCCGU--UUGCaaGGUUCG-----UGCGGU-ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 42612 | 0.69 | 0.978006 |
Target: 5'- aCGGCcgccGGCGgcgCCGucGC-CGCCAUGGa -3' miRNA: 3'- -GCCGu---UUGCaa-GGUu-CGuGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 114633 | 0.69 | 0.978006 |
Target: 5'- uGGCcuACGUgaaCCGGGUGCGCaccgaCAUGGg -3' miRNA: 3'- gCCGuuUGCAa--GGUUCGUGCG-----GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 76949 | 0.69 | 0.978006 |
Target: 5'- gCGGU--GCGUUCC-AGCAUGUCGcGGc -3' miRNA: 3'- -GCCGuuUGCAAGGuUCGUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 174666 | 0.69 | 0.980239 |
Target: 5'- aGGC-GGCGUUCUuAGcCACGUCAUGc -3' miRNA: 3'- gCCGuUUGCAAGGuUC-GUGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 167212 | 0.69 | 0.980239 |
Target: 5'- uGGCAGGCGcgCCGcaucuugguguAGgGCGCCA-GGu -3' miRNA: 3'- gCCGUUUGCaaGGU-----------UCgUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 117879 | 0.69 | 0.980239 |
Target: 5'- cCGGCGAGg---CCGAGCACGgCcgGGc -3' miRNA: 3'- -GCCGUUUgcaaGGUUCGUGCgGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 71530 | 0.69 | 0.982298 |
Target: 5'- cCGGCcGACGUcaCCGAGCcCGCCGc-- -3' miRNA: 3'- -GCCGuUUGCAa-GGUUCGuGCGGUacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 78872 | 0.69 | 0.982298 |
Target: 5'- cCGGUcGAUGa-CCAGGCGCGUCAgGGg -3' miRNA: 3'- -GCCGuUUGCaaGGUUCGUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 57236 | 0.69 | 0.982298 |
Target: 5'- aGGCGAGCGgcUCucGCGCgGCCAguUGGc -3' miRNA: 3'- gCCGUUUGCaaGGuuCGUG-CGGU--ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 232282 | 0.68 | 0.98364 |
Target: 5'- aCGGUGGAUGUcgucgcgcccacggUCCGGGCACaaucaaCCGUGGu -3' miRNA: 3'- -GCCGUUUGCA--------------AGGUUCGUGc-----GGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 110735 | 0.68 | 0.984009 |
Target: 5'- cCGGCAGcugGCaGUUCCAcucggccagcgagAGCAgGCCGcGGa -3' miRNA: 3'- -GCCGUU---UG-CAAGGU-------------UCGUgCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 151566 | 0.68 | 0.984191 |
Target: 5'- gGGCGucuCGUgucaCCGcgucAGCACGCCcgAUGGg -3' miRNA: 3'- gCCGUuu-GCAa---GGU----UCGUGCGG--UACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 119084 | 0.68 | 0.984191 |
Target: 5'- gGGCAAGCagguGUggCAGGCGCGCC-UGa -3' miRNA: 3'- gCCGUUUG----CAagGUUCGUGCGGuACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 202413 | 0.68 | 0.984191 |
Target: 5'- cCGGUGAAaag-CCAGGCGCaacCCAUGGg -3' miRNA: 3'- -GCCGUUUgcaaGGUUCGUGc--GGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 127786 | 0.68 | 0.985251 |
Target: 5'- gCGGCGGccguagccgcACGUgcuccaugaucugCCAGGCGCGCagcuCGUGGa -3' miRNA: 3'- -GCCGUU----------UGCAa------------GGUUCGUGCG----GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 45245 | 0.68 | 0.985927 |
Target: 5'- cCGGCAGACGggccugacccCCAAGCGCuuCC-UGGa -3' miRNA: 3'- -GCCGUUUGCaa--------GGUUCGUGc-GGuACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 28006 | 0.68 | 0.985927 |
Target: 5'- gCGGCAccuCGcugUCCuccuccAGCACGCCGcGGg -3' miRNA: 3'- -GCCGUuu-GCa--AGGu-----UCGUGCGGUaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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