Results 121 - 140 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13971 | 3' | -51.8 | NC_003521.1 | + | 151252 | 0.68 | 0.988957 |
Target: 5'- aGGCGAuaaacgGCGUUUCGGGUguGCGCUAcGGc -3' miRNA: 3'- gCCGUU------UGCAAGGUUCG--UGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 133754 | 0.68 | 0.990268 |
Target: 5'- cCGGCAGgcccgGCGaUUCCGGGgACGCgGcGGa -3' miRNA: 3'- -GCCGUU-----UGC-AAGGUUCgUGCGgUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 204310 | 0.68 | 0.990268 |
Target: 5'- cCGGCGggUGa-CCGcAGUccgACGCCAUGGu -3' miRNA: 3'- -GCCGUuuGCaaGGU-UCG---UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 117061 | 0.68 | 0.990268 |
Target: 5'- aGGCGGccGCGgagCCGgcGGuCACGCCGUGc -3' miRNA: 3'- gCCGUU--UGCaa-GGU--UC-GUGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 162368 | 0.67 | 0.991453 |
Target: 5'- gGGCc-GCGUUCCcAGCcGCGCCGa-- -3' miRNA: 3'- gCCGuuUGCAAGGuUCG-UGCGGUacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 170744 | 0.67 | 0.991453 |
Target: 5'- uGGCAuuauCGgUCU-GGUugGCCAUGGa -3' miRNA: 3'- gCCGUuu--GCaAGGuUCGugCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 142554 | 0.67 | 0.991453 |
Target: 5'- aCGGCuuguCGcccgCCAGGCuCGCCGUGc -3' miRNA: 3'- -GCCGuuu-GCaa--GGUUCGuGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 23002 | 0.67 | 0.991453 |
Target: 5'- aCGGUGAuaGCGgcaUCCGAGgAgGCCAaUGGg -3' miRNA: 3'- -GCCGUU--UGCa--AGGUUCgUgCGGU-ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 102830 | 0.67 | 0.991453 |
Target: 5'- gCGGCGcugcgagaAGCGcgCCAgGGCGC-CCGUGGc -3' miRNA: 3'- -GCCGU--------UUGCaaGGU-UCGUGcGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 76748 | 0.67 | 0.991453 |
Target: 5'- aGGCAugacGACGaccUCCgAGGCGaccguCGCCGUGGc -3' miRNA: 3'- gCCGU----UUGCa--AGG-UUCGU-----GCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 88126 | 0.67 | 0.991453 |
Target: 5'- -cGCAGuACGUgCCGAGCACcgaGCCGcUGGa -3' miRNA: 3'- gcCGUU-UGCAaGGUUCGUG---CGGU-ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 213462 | 0.67 | 0.992522 |
Target: 5'- aGGCGucgcacgucauGACGgcgCCGGuGCACGCCAUccacaGGg -3' miRNA: 3'- gCCGU-----------UUGCaa-GGUU-CGUGCGGUA-----CC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 39417 | 0.67 | 0.992522 |
Target: 5'- uGGCAcaGGCcgUCCAgucccguaGGCgGCGCCGUGGc -3' miRNA: 3'- gCCGU--UUGcaAGGU--------UCG-UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 200385 | 0.67 | 0.992522 |
Target: 5'- gGGCuaGAGCGcg-CGAGCACcugGCCGUGGu -3' miRNA: 3'- gCCG--UUUGCaagGUUCGUG---CGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 177785 | 0.67 | 0.992522 |
Target: 5'- gGGCcGACGgggccugUCCGcuGGUggGCGUCGUGGg -3' miRNA: 3'- gCCGuUUGCa------AGGU--UCG--UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 239644 | 0.67 | 0.992522 |
Target: 5'- uGGCAcaGGCcgUCCAgucccguaGGCgGCGCCGUGGc -3' miRNA: 3'- gCCGU--UUGcaAGGU--------UCG-UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 93483 | 0.67 | 0.992522 |
Target: 5'- uCGGacgaGGACGaagagUCCGagggcgccuAGCGCGUCGUGGu -3' miRNA: 3'- -GCCg---UUUGCa----AGGU---------UCGUGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 57312 | 0.67 | 0.993297 |
Target: 5'- aCGGCAaaauaGACGcucggacaccugUCCGAGCGCGgUAUGa -3' miRNA: 3'- -GCCGU-----UUGCa-----------AGGUUCGUGCgGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 178785 | 0.67 | 0.99339 |
Target: 5'- gCGGCGuccgcggGACGggCgAGGCAUGCCcgGcGg -3' miRNA: 3'- -GCCGU-------UUGCaaGgUUCGUGCGGuaC-C- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 14214 | 0.67 | 0.99339 |
Target: 5'- gCGGCGagccccuGACGccgCUggGCuACGCCGUGa -3' miRNA: 3'- -GCCGU-------UUGCaa-GGuuCG-UGCGGUACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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