miRNA display CGI


Results 141 - 160 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 210176 0.67 0.993481
Target:  5'- aGGCGccauGACGag-CAGGCGCGCCGccggUGGc -3'
miRNA:   3'- gCCGU----UUGCaagGUUCGUGCGGU----ACC- -5'
13971 3' -51.8 NC_003521.1 + 37428 0.67 0.993481
Target:  5'- uGGC--GCGgcgCCGAGCcucugaaggugACGCUGUGGg -3'
miRNA:   3'- gCCGuuUGCaa-GGUUCG-----------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 138794 0.67 0.993481
Target:  5'- gCGGCAAccgccaggagauGCccUCCAuGGCGCGCCugAUGGc -3'
miRNA:   3'- -GCCGUU------------UGcaAGGU-UCGUGCGG--UACC- -5'
13971 3' -51.8 NC_003521.1 + 97612 0.67 0.993481
Target:  5'- aCGGC-GACGgcUCCGGcCugGCCAUGa -3'
miRNA:   3'- -GCCGuUUGCa-AGGUUcGugCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 107807 0.67 0.994258
Target:  5'- aCGGUgauuaGggUGUUCCAccgcGGCACGUuguagagCAUGGg -3'
miRNA:   3'- -GCCG-----UuuGCAAGGU----UCGUGCG-------GUACC- -5'
13971 3' -51.8 NC_003521.1 + 18040 0.67 0.994258
Target:  5'- aCGuGCAGAaGUUCCucuGCgccgaccccaccgACGCCGUGGc -3'
miRNA:   3'- -GC-CGUUUgCAAGGuu-CG-------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 150506 0.67 0.994258
Target:  5'- aCGGCGccGGCGgggCCcugcuagGAGCGggaGCCGUGGg -3'
miRNA:   3'- -GCCGU--UUGCaa-GG-------UUCGUg--CGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 214309 0.67 0.994258
Target:  5'- uGGCuc-CGUgccucuugugCCAAGCAgucucucucgaucCGCCGUGGa -3'
miRNA:   3'- gCCGuuuGCAa---------GGUUCGU-------------GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 40674 0.67 0.994339
Target:  5'- gGGCAAACGaUgUggGCGgcgUGCUGUGGa -3'
miRNA:   3'- gCCGUUUGCaAgGuuCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 135511 0.67 0.994339
Target:  5'- gCGGCGAcgucgcgcgGCGUccCCAcGCcCGCCAUGa -3'
miRNA:   3'- -GCCGUU---------UGCAa-GGUuCGuGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 150792 0.67 0.994339
Target:  5'- gGGCGGGCG---CGAGC-CGCCAgGGg -3'
miRNA:   3'- gCCGUUUGCaagGUUCGuGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 124097 0.67 0.994339
Target:  5'- gGGCGccGAC--UCCGGGaC-CGCCGUGGa -3'
miRNA:   3'- gCCGU--UUGcaAGGUUC-GuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 236272 0.67 0.994339
Target:  5'- uCGGCAcuCGaUCCucaGAGCaACGCCucgGGg -3'
miRNA:   3'- -GCCGUuuGCaAGG---UUCG-UGCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 352 0.67 0.994339
Target:  5'- gGGCAAACGaUgUggGCGgcgUGCUGUGGa -3'
miRNA:   3'- gCCGUUUGCaAgGuuCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 192919 0.67 0.994339
Target:  5'- uGGaguuucuGCGUUCCcaGAGcCGCGCCcUGGg -3'
miRNA:   3'- gCCguu----UGCAAGG--UUC-GUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 91520 0.67 0.994339
Target:  5'- aCGGCGGccGCGUcgucgcgcUCC-AGCACGUacuuGUGGg -3'
miRNA:   3'- -GCCGUU--UGCA--------AGGuUCGUGCGg---UACC- -5'
13971 3' -51.8 NC_003521.1 + 16262 0.67 0.995104
Target:  5'- gCGGCu-GCGcugccgcuggUUCCugcuGgGCGCCGUGGg -3'
miRNA:   3'- -GCCGuuUGC----------AAGGuu--CgUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 128151 0.67 0.995104
Target:  5'- uCGGCGAAgGccUgCAGGCAgGgCGUGGg -3'
miRNA:   3'- -GCCGUUUgCa-AgGUUCGUgCgGUACC- -5'
13971 3' -51.8 NC_003521.1 + 185355 0.67 0.995104
Target:  5'- aCGGCAAgGCGgcgcagugccucUUCC-AGCGCGCCGc-- -3'
miRNA:   3'- -GCCGUU-UGC------------AAGGuUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 157164 0.67 0.995104
Target:  5'- aGGUcAACGUgCgCAAGCGCGCCu--- -3'
miRNA:   3'- gCCGuUUGCAaG-GUUCGUGCGGuacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.