Results 81 - 100 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13971 | 3' | -51.8 | NC_003521.1 | + | 18040 | 0.67 | 0.994258 |
Target: 5'- aCGuGCAGAaGUUCCucuGCgccgaccccaccgACGCCGUGGc -3' miRNA: 3'- -GC-CGUUUgCAAGGuu-CG-------------UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 214309 | 0.67 | 0.994258 |
Target: 5'- uGGCuc-CGUgccucuugugCCAAGCAgucucucucgaucCGCCGUGGa -3' miRNA: 3'- gCCGuuuGCAa---------GGUUCGU-------------GCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 97612 | 0.67 | 0.993481 |
Target: 5'- aCGGC-GACGgcUCCGGcCugGCCAUGa -3' miRNA: 3'- -GCCGuUUGCa-AGGUUcGugCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 210176 | 0.67 | 0.993481 |
Target: 5'- aGGCGccauGACGag-CAGGCGCGCCGccggUGGc -3' miRNA: 3'- gCCGU----UUGCaagGUUCGUGCGGU----ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 138794 | 0.67 | 0.993481 |
Target: 5'- gCGGCAAccgccaggagauGCccUCCAuGGCGCGCCugAUGGc -3' miRNA: 3'- -GCCGUU------------UGcaAGGU-UCGUGCGG--UACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 37428 | 0.67 | 0.993481 |
Target: 5'- uGGC--GCGgcgCCGAGCcucugaaggugACGCUGUGGg -3' miRNA: 3'- gCCGuuUGCaa-GGUUCG-----------UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 178785 | 0.67 | 0.99339 |
Target: 5'- gCGGCGuccgcggGACGggCgAGGCAUGCCcgGcGg -3' miRNA: 3'- -GCCGU-------UUGCaaGgUUCGUGCGGuaC-C- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 14214 | 0.67 | 0.99339 |
Target: 5'- gCGGCGagccccuGACGccgCUggGCuACGCCGUGa -3' miRNA: 3'- -GCCGU-------UUGCaa-GGuuCG-UGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 57312 | 0.67 | 0.993297 |
Target: 5'- aCGGCAaaauaGACGcucggacaccugUCCGAGCGCGgUAUGa -3' miRNA: 3'- -GCCGU-----UUGCa-----------AGGUUCGUGCgGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 239644 | 0.67 | 0.992522 |
Target: 5'- uGGCAcaGGCcgUCCAgucccguaGGCgGCGCCGUGGc -3' miRNA: 3'- gCCGU--UUGcaAGGU--------UCG-UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 200385 | 0.67 | 0.992522 |
Target: 5'- gGGCuaGAGCGcg-CGAGCACcugGCCGUGGu -3' miRNA: 3'- gCCG--UUUGCaagGUUCGUG---CGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 39417 | 0.67 | 0.992522 |
Target: 5'- uGGCAcaGGCcgUCCAgucccguaGGCgGCGCCGUGGc -3' miRNA: 3'- gCCGU--UUGcaAGGU--------UCG-UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 177785 | 0.67 | 0.992522 |
Target: 5'- gGGCcGACGgggccugUCCGcuGGUggGCGUCGUGGg -3' miRNA: 3'- gCCGuUUGCa------AGGU--UCG--UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 93483 | 0.67 | 0.992522 |
Target: 5'- uCGGacgaGGACGaagagUCCGagggcgccuAGCGCGUCGUGGu -3' miRNA: 3'- -GCCg---UUUGCa----AGGU---------UCGUGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 213462 | 0.67 | 0.992522 |
Target: 5'- aGGCGucgcacgucauGACGgcgCCGGuGCACGCCAUccacaGGg -3' miRNA: 3'- gCCGU-----------UUGCaa-GGUU-CGUGCGGUA-----CC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 170744 | 0.67 | 0.991453 |
Target: 5'- uGGCAuuauCGgUCU-GGUugGCCAUGGa -3' miRNA: 3'- gCCGUuu--GCaAGGuUCGugCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 23002 | 0.67 | 0.991453 |
Target: 5'- aCGGUGAuaGCGgcaUCCGAGgAgGCCAaUGGg -3' miRNA: 3'- -GCCGUU--UGCa--AGGUUCgUgCGGU-ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 142554 | 0.67 | 0.991453 |
Target: 5'- aCGGCuuguCGcccgCCAGGCuCGCCGUGc -3' miRNA: 3'- -GCCGuuu-GCaa--GGUUCGuGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 162368 | 0.67 | 0.991453 |
Target: 5'- gGGCc-GCGUUCCcAGCcGCGCCGa-- -3' miRNA: 3'- gCCGuuUGCAAGGuUCG-UGCGGUacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 88126 | 0.67 | 0.991453 |
Target: 5'- -cGCAGuACGUgCCGAGCACcgaGCCGcUGGa -3' miRNA: 3'- gcCGUU-UGCAaGGUUCGUG---CGGU-ACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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