miRNA display CGI


Results 61 - 80 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 74540 0.66 0.996909
Target:  5'- aGGCcacGCGgaCCAGcCGCGCCGUGc -3'
miRNA:   3'- gCCGuu-UGCaaGGUUcGUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 74589 0.66 0.997775
Target:  5'- gCGGCGcGGCGUcCCGcggccGGCGCGCCu--- -3'
miRNA:   3'- -GCCGU-UUGCAaGGU-----UCGUGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 76194 0.7 0.970196
Target:  5'- aGGCGccacagGAUGggCCAgaagcccgccGGCACGCCcUGGg -3'
miRNA:   3'- gCCGU------UUGCaaGGU----------UCGUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 76371 0.66 0.998125
Target:  5'- gCGGCGAcCGUgacggCCGcGGC-CGCgGUGGc -3'
miRNA:   3'- -GCCGUUuGCAa----GGU-UCGuGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 76748 0.67 0.991453
Target:  5'- aGGCAugacGACGaccUCCgAGGCGaccguCGCCGUGGc -3'
miRNA:   3'- gCCGU----UUGCa--AGG-UUCGU-----GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 76949 0.69 0.978006
Target:  5'- gCGGU--GCGUUCC-AGCAUGUCGcGGc -3'
miRNA:   3'- -GCCGuuUGCAAGGuUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 76991 0.66 0.996909
Target:  5'- gCGGCGAugGg--CAGGCACGgCAUc- -3'
miRNA:   3'- -GCCGUUugCaagGUUCGUGCgGUAcc -5'
13971 3' -51.8 NC_003521.1 + 78872 0.69 0.982298
Target:  5'- cCGGUcGAUGa-CCAGGCGCGUCAgGGg -3'
miRNA:   3'- -GCCGuUUGCaaGGUUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 87393 0.66 0.997775
Target:  5'- gCGGCGGAgGUgacgCCGAcGCucACGCCcagGGg -3'
miRNA:   3'- -GCCGUUUgCAa---GGUU-CG--UGCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 87927 0.66 0.996382
Target:  5'- uGGCcgcCGcgCCGGGCAUGCucuuCAUGGa -3'
miRNA:   3'- gCCGuuuGCaaGGUUCGUGCG----GUACC- -5'
13971 3' -51.8 NC_003521.1 + 88063 0.73 0.89533
Target:  5'- aGGCGAcgcCGUUCCGcGCGCuGCcCGUGGa -3'
miRNA:   3'- gCCGUUu--GCAAGGUuCGUG-CG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 88126 0.67 0.991453
Target:  5'- -cGCAGuACGUgCCGAGCACcgaGCCGcUGGa -3'
miRNA:   3'- gcCGUU-UGCAaGGUUCGUG---CGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 89032 0.7 0.960577
Target:  5'- aCGGCGGugaGUUCCucGC-CGCuCAUGGu -3'
miRNA:   3'- -GCCGUUug-CAAGGuuCGuGCG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 90038 0.66 0.995782
Target:  5'- gCGGUAGACGgccUCCAgcuccGGgACGCCGa-- -3'
miRNA:   3'- -GCCGUUUGCa--AGGU-----UCgUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 91028 0.66 0.996909
Target:  5'- aCGGCcGGcCGUUCgcGGaACGCCGUGGc -3'
miRNA:   3'- -GCCGuUU-GCAAGguUCgUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 91176 0.69 0.972174
Target:  5'- gGGCGcaugcgccucuggaAGCGguaCCGcgGGCGCGUCGUGGg -3'
miRNA:   3'- gCCGU--------------UUGCaa-GGU--UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 91520 0.67 0.994339
Target:  5'- aCGGCGGccGCGUcgucgcgcUCC-AGCACGUacuuGUGGg -3'
miRNA:   3'- -GCCGUU--UGCA--------AGGuUCGUGCGg---UACC- -5'
13971 3' -51.8 NC_003521.1 + 91625 0.66 0.996909
Target:  5'- uGGguGGCGUagUCCucguGGC-CGCCgGUGGc -3'
miRNA:   3'- gCCguUUGCA--AGGu---UCGuGCGG-UACC- -5'
13971 3' -51.8 NC_003521.1 + 93483 0.67 0.992522
Target:  5'- uCGGacgaGGACGaagagUCCGagggcgccuAGCGCGUCGUGGu -3'
miRNA:   3'- -GCCg---UUUGCa----AGGU---------UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 95826 0.68 0.987513
Target:  5'- uCGGCGcGCGaggCCucgguGGCAUGCCGcUGGc -3'
miRNA:   3'- -GCCGUuUGCaa-GGu----UCGUGCGGU-ACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.