miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 95895 0.73 0.89336
Target:  5'- gCGGCGAcgcGCGacaugaacuccucggCCAccGGCAUGCCGUGGg -3'
miRNA:   3'- -GCCGUU---UGCaa-------------GGU--UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 95963 0.66 0.997372
Target:  5'- gCGGUAGGCGUacgaCAGGCGCaggaCCGUGa -3'
miRNA:   3'- -GCCGUUUGCAag--GUUCGUGc---GGUACc -5'
13971 3' -51.8 NC_003521.1 + 96654 0.66 0.996382
Target:  5'- gCGGCAGGCGgcgCCGgcgugcuugaagAGCaACGCCucGGa -3'
miRNA:   3'- -GCCGUUUGCaa-GGU------------UCG-UGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 97612 0.67 0.993481
Target:  5'- aCGGC-GACGgcUCCGGcCugGCCAUGa -3'
miRNA:   3'- -GCCGuUUGCa-AGGUUcGugCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 97637 0.66 0.998125
Target:  5'- aGGCucGACGUUCgcGGCGgCGCCG-GGu -3'
miRNA:   3'- gCCGu-UUGCAAGguUCGU-GCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 98576 0.66 0.995718
Target:  5'- uCGGCcgaggagGAGCGggCCcgcGAGCGCagcgacgagGCCAUGGc -3'
miRNA:   3'- -GCCG-------UUUGCaaGG---UUCGUG---------CGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 99765 0.72 0.91331
Target:  5'- -cGCAGACGUUgugguggUCGAGCAgGCCcgGGg -3'
miRNA:   3'- gcCGUUUGCAA-------GGUUCGUgCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 99970 0.69 0.975593
Target:  5'- uCGGCcgagaccgcgAAGCGcUCC-AGCACGUCGUGa -3'
miRNA:   3'- -GCCG----------UUUGCaAGGuUCGUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 101841 0.69 0.974055
Target:  5'- uGGCGGGC--UCCGGGUuguggauggcggacuGCGUCAUGGg -3'
miRNA:   3'- gCCGUUUGcaAGGUUCG---------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 101913 0.81 0.506603
Target:  5'- gGGCAGGCGcaCCGAGCG-GCCGUGGu -3'
miRNA:   3'- gCCGUUUGCaaGGUUCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 101989 0.69 0.977773
Target:  5'- aGGCGGugcagcuGCGUgUCCAGGCACagGgCGUGGu -3'
miRNA:   3'- gCCGUU-------UGCA-AGGUUCGUG--CgGUACC- -5'
13971 3' -51.8 NC_003521.1 + 101997 0.73 0.888685
Target:  5'- aGGCcguAGCcgccgCCAucaGGCGCGCCAUGGa -3'
miRNA:   3'- gCCGu--UUGcaa--GGU---UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 102362 0.66 0.995782
Target:  5'- uGGCAGAUGUggcgCCGccggcgauGCACGCgCggGGa -3'
miRNA:   3'- gCCGUUUGCAa---GGUu-------CGUGCG-GuaCC- -5'
13971 3' -51.8 NC_003521.1 + 102830 0.67 0.991453
Target:  5'- gCGGCGcugcgagaAGCGcgCCAgGGCGC-CCGUGGc -3'
miRNA:   3'- -GCCGU--------UUGCaaGGU-UCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 103213 0.7 0.967198
Target:  5'- gCGGUAGGCG-UCC-AGCGCGCgGUa- -3'
miRNA:   3'- -GCCGUUUGCaAGGuUCGUGCGgUAcc -5'
13971 3' -51.8 NC_003521.1 + 103686 0.66 0.996909
Target:  5'- uGGCGGGCGagUCCGAGCguccgaACGCgGgcucGGa -3'
miRNA:   3'- gCCGUUUGCa-AGGUUCG------UGCGgUa---CC- -5'
13971 3' -51.8 NC_003521.1 + 104976 0.72 0.925103
Target:  5'- gGGCuGACGUUCCcGGUGC-UCAUGGg -3'
miRNA:   3'- gCCGuUUGCAAGGuUCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 105273 0.69 0.972992
Target:  5'- aGGCGGuugaGUUCCGucaacAGCGCGuUCAUGGc -3'
miRNA:   3'- gCCGUUug--CAAGGU-----UCGUGC-GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 107807 0.67 0.994258
Target:  5'- aCGGUgauuaGggUGUUCCAccgcGGCACGUuguagagCAUGGg -3'
miRNA:   3'- -GCCG-----UuuGCAAGGU----UCGUGCG-------GUACC- -5'
13971 3' -51.8 NC_003521.1 + 108634 0.66 0.997775
Target:  5'- uGGcCAGGCGgcugCCGaucAGCGCGCaCGUGu -3'
miRNA:   3'- gCC-GUUUGCaa--GGU---UCGUGCG-GUACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.