miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 109424 0.69 0.975593
Target:  5'- aCGGCGAuGCGgUCCAGGCugACGCCc--- -3'
miRNA:   3'- -GCCGUU-UGCaAGGUUCG--UGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 110660 0.66 0.998125
Target:  5'- gCGGCAGGCaggCCAGGgcguaGCGCUcgGUGGc -3'
miRNA:   3'- -GCCGUUUGcaaGGUUCg----UGCGG--UACC- -5'
13971 3' -51.8 NC_003521.1 + 110735 0.68 0.984009
Target:  5'- cCGGCAGcugGCaGUUCCAcucggccagcgagAGCAgGCCGcGGa -3'
miRNA:   3'- -GCCGUU---UG-CAAGGU-------------UCGUgCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 112205 0.68 0.988957
Target:  5'- aCGGCAAcuuCGUgcucagccCCGAGaACGCCGUGa -3'
miRNA:   3'- -GCCGUUu--GCAa-------GGUUCgUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 113545 0.74 0.836181
Target:  5'- aCGGCGugucgGACGUgCCGcGCcuggGCGCCAUGGa -3'
miRNA:   3'- -GCCGU-----UUGCAaGGUuCG----UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 113810 0.66 0.998125
Target:  5'- gCGGC-GGCGUcgUCGGGCAcCGCCAcgucGGg -3'
miRNA:   3'- -GCCGuUUGCAa-GGUUCGU-GCGGUa---CC- -5'
13971 3' -51.8 NC_003521.1 + 113975 0.68 0.988957
Target:  5'- aCGGCAGGCGgccggCCGGGCACcgGCUg--- -3'
miRNA:   3'- -GCCGUUUGCaa---GGUUCGUG--CGGuacc -5'
13971 3' -51.8 NC_003521.1 + 114633 0.69 0.978006
Target:  5'- uGGCcuACGUgaaCCGGGUGCGCaccgaCAUGGg -3'
miRNA:   3'- gCCGuuUGCAa--GGUUCGUGCG-----GUACC- -5'
13971 3' -51.8 NC_003521.1 + 114712 0.75 0.793971
Target:  5'- cCGGCAcGACGagaucgaccgcuggaUCC-GGCACGCCGUGGg -3'
miRNA:   3'- -GCCGU-UUGCa--------------AGGuUCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 115225 0.66 0.997775
Target:  5'- uCGGCcGAgaGUUCCuccguguuguGCGcCGCCGUGGu -3'
miRNA:   3'- -GCCGuUUg-CAAGGuu--------CGU-GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 115696 0.73 0.888685
Target:  5'- gGGCAAACuggCCAAGCugacgGCGgCCGUGGu -3'
miRNA:   3'- gCCGUUUGcaaGGUUCG-----UGC-GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 116004 0.7 0.967198
Target:  5'- uCGcGCAggagcAGCGUcUCCAGGC-CGCgGUGGa -3'
miRNA:   3'- -GC-CGU-----UUGCA-AGGUUCGuGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 116010 0.7 0.967198
Target:  5'- aGGagcAGCGUcUCCAGGC-CGCgGUGGa -3'
miRNA:   3'- gCCgu-UUGCA-AGGUUCGuGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 117061 0.68 0.990268
Target:  5'- aGGCGGccGCGgagCCGgcGGuCACGCCGUGc -3'
miRNA:   3'- gCCGUU--UGCaa-GGU--UC-GUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 117879 0.69 0.980239
Target:  5'- cCGGCGAGg---CCGAGCACGgCcgGGc -3'
miRNA:   3'- -GCCGUUUgcaaGGUUCGUGCgGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 118191 0.66 0.996382
Target:  5'- cCGGCAAAguCGgggccgCCGAGCGCGCgGc-- -3'
miRNA:   3'- -GCCGUUU--GCaa----GGUUCGUGCGgUacc -5'
13971 3' -51.8 NC_003521.1 + 119084 0.68 0.984191
Target:  5'- gGGCAAGCagguGUggCAGGCGCGCC-UGa -3'
miRNA:   3'- gCCGUUUG----CAagGUUCGUGCGGuACc -5'
13971 3' -51.8 NC_003521.1 + 119345 0.68 0.988957
Target:  5'- gGGCAGGgGUccggccUCCAuGGaCACGCCggGGa -3'
miRNA:   3'- gCCGUUUgCA------AGGU-UC-GUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 119980 0.69 0.978006
Target:  5'- gGGCGucGACGagCCGGGCgacauGCGCCGcUGGc -3'
miRNA:   3'- gCCGU--UUGCaaGGUUCG-----UGCGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 120068 0.83 0.423502
Target:  5'- uGGCAGGcCGgcaUCCAGGCGCGCCAccUGGu -3'
miRNA:   3'- gCCGUUU-GCa--AGGUUCGUGCGGU--ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.