miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 196805 0.69 0.972992
Target:  5'- aGGUAggUGggCgaGGGCAgGCCGUGGu -3'
miRNA:   3'- gCCGUuuGCaaGg-UUCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 196253 0.66 0.995782
Target:  5'- gCGGUuucuGugGUUCCGGGUAC-CCGcGGu -3'
miRNA:   3'- -GCCGu---UugCAAGGUUCGUGcGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 195329 0.66 0.996909
Target:  5'- aCGGC-GACGUguagaAGGC-UGCCGUGGu -3'
miRNA:   3'- -GCCGuUUGCAagg--UUCGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 194158 0.7 0.963994
Target:  5'- uCGGCGGGCgGUUCCAu---CGCCcgGGu -3'
miRNA:   3'- -GCCGUUUG-CAAGGUucguGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 192919 0.67 0.994339
Target:  5'- uGGaguuucuGCGUUCCcaGAGcCGCGCCcUGGg -3'
miRNA:   3'- gCCguu----UGCAAGG--UUC-GUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 190695 0.66 0.998125
Target:  5'- aGGCAcacGACGgguagCCA--CACGCuCGUGGg -3'
miRNA:   3'- gCCGU---UUGCaa---GGUucGUGCG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 188452 0.72 0.925103
Target:  5'- aCGGCGgucaggauGACGcgCCuccgagcuacGAGCAgGCCGUGGg -3'
miRNA:   3'- -GCCGU--------UUGCaaGG----------UUCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 187625 0.69 0.975593
Target:  5'- gGGCGAGcCGggCC--GCGCGCCGcUGGc -3'
miRNA:   3'- gCCGUUU-GCaaGGuuCGUGCGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 185355 0.67 0.995104
Target:  5'- aCGGCAAgGCGgcgcagugccucUUCC-AGCGCGCCGc-- -3'
miRNA:   3'- -GCCGUU-UGC------------AAGGuUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 181145 0.73 0.89533
Target:  5'- gGGCuccaccuGGCGUcugagcuccUCCAGGCGCGCCAg-- -3'
miRNA:   3'- gCCGu------UUGCA---------AGGUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 180636 0.69 0.978006
Target:  5'- aCGGCGcGCGUUCU---CACGCCGcGGc -3'
miRNA:   3'- -GCCGUuUGCAAGGuucGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 179453 0.66 0.998125
Target:  5'- aGGUccuuGAGCuGUUgCAggaAGCGgGCCGUGGg -3'
miRNA:   3'- gCCG----UUUG-CAAgGU---UCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 178785 0.67 0.99339
Target:  5'- gCGGCGuccgcggGACGggCgAGGCAUGCCcgGcGg -3'
miRNA:   3'- -GCCGU-------UUGCaaGgUUCGUGCGGuaC-C- -5'
13971 3' -51.8 NC_003521.1 + 177785 0.67 0.992522
Target:  5'- gGGCcGACGgggccugUCCGcuGGUggGCGUCGUGGg -3'
miRNA:   3'- gCCGuUUGCa------AGGU--UCG--UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 175447 0.66 0.998125
Target:  5'- uCGGCGuACGaUCgGcGGCGCGCCGUc- -3'
miRNA:   3'- -GCCGUuUGCaAGgU-UCGUGCGGUAcc -5'
13971 3' -51.8 NC_003521.1 + 175196 0.68 0.987513
Target:  5'- uGGCGcGCGUcagcUCCucGCGgGCCGUGu -3'
miRNA:   3'- gCCGUuUGCA----AGGuuCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 174666 0.69 0.980239
Target:  5'- aGGC-GGCGUUCUuAGcCACGUCAUGc -3'
miRNA:   3'- gCCGuUUGCAAGGuUC-GUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 174428 0.7 0.970196
Target:  5'- aGGCGgugcAGCGUUUCAcGCACGCgcUGGu -3'
miRNA:   3'- gCCGU----UUGCAAGGUuCGUGCGguACC- -5'
13971 3' -51.8 NC_003521.1 + 170744 0.67 0.991453
Target:  5'- uGGCAuuauCGgUCU-GGUugGCCAUGGa -3'
miRNA:   3'- gCCGUuu--GCaAGGuUCGugCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 169461 0.72 0.919617
Target:  5'- gCGGCGGguuCGUcgCCAGGCGCGUCGucguUGGc -3'
miRNA:   3'- -GCCGUUu--GCAa-GGUUCGUGCGGU----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.