miRNA display CGI


Results 61 - 80 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 169436 0.68 0.987513
Target:  5'- -aGCAGGCGgUCCucgaacAGCGgguCGCCGUGGa -3'
miRNA:   3'- gcCGUUUGCaAGGu-----UCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 169038 0.66 0.997372
Target:  5'- cCGGuCAAGCuggUCUcGGCGCGCCAcgucGGa -3'
miRNA:   3'- -GCC-GUUUGca-AGGuUCGUGCGGUa---CC- -5'
13971 3' -51.8 NC_003521.1 + 168099 0.72 0.930353
Target:  5'- uCGGCGAagaccgaggagGCGUggaucgCCGAGgacgacaGCGCCGUGGg -3'
miRNA:   3'- -GCCGUU-----------UGCAa-----GGUUCg------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 167212 0.69 0.980239
Target:  5'- uGGCAGGCGcgCCGcaucuugguguAGgGCGCCA-GGu -3'
miRNA:   3'- gCCGUUUGCaaGGU-----------UCgUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 166673 0.66 0.995718
Target:  5'- gCGGCAccugggccccguGGCGcgCCAcgucguccugcacGGCGC-CCAUGGg -3'
miRNA:   3'- -GCCGU------------UUGCaaGGU-------------UCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 166252 0.75 0.810802
Target:  5'- cCGGCGAGCGggCCGugcucacgGGCACGCgCAcGGc -3'
miRNA:   3'- -GCCGUUUGCaaGGU--------UCGUGCG-GUaCC- -5'
13971 3' -51.8 NC_003521.1 + 165372 0.74 0.852196
Target:  5'- uGGUAGuGCGUgUCCAGGUACGCguUGGc -3'
miRNA:   3'- gCCGUU-UGCA-AGGUUCGUGCGguACC- -5'
13971 3' -51.8 NC_003521.1 + 163205 0.72 0.924565
Target:  5'- uCGGCcGGCGccgUCaCGGGCGCGCCcggugacGUGGg -3'
miRNA:   3'- -GCCGuUUGCa--AG-GUUCGUGCGG-------UACC- -5'
13971 3' -51.8 NC_003521.1 + 163063 0.66 0.998125
Target:  5'- gCGGCAcuACGUgaaGAGcCACGCCGaGGc -3'
miRNA:   3'- -GCCGUu-UGCAaggUUC-GUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 162368 0.67 0.991453
Target:  5'- gGGCc-GCGUUCCcAGCcGCGCCGa-- -3'
miRNA:   3'- gCCGuuUGCAAGGuUCG-UGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 157564 0.66 0.997372
Target:  5'- -cGCAGGCGUgcUCCcc-CACGCCAaGGa -3'
miRNA:   3'- gcCGUUUGCA--AGGuucGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 157164 0.67 0.995104
Target:  5'- aGGUcAACGUgCgCAAGCGCGCCu--- -3'
miRNA:   3'- gCCGuUUGCAaG-GUUCGUGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 155636 0.68 0.987513
Target:  5'- gCGGCGGugGUagCAGaaGCGCCGUGc -3'
miRNA:   3'- -GCCGUUugCAagGUUcgUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 155298 0.68 0.988957
Target:  5'- gCGGC---UGUUCCucucGCACGCCGaGGu -3'
miRNA:   3'- -GCCGuuuGCAAGGuu--CGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 155265 0.71 0.939678
Target:  5'- gCGGCGgcGGCGccUCAGGCccgucgcugggcaACGCCAUGGg -3'
miRNA:   3'- -GCCGU--UUGCaaGGUUCG-------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 151566 0.68 0.984191
Target:  5'- gGGCGucuCGUgucaCCGcgucAGCACGCCcgAUGGg -3'
miRNA:   3'- gCCGUuu-GCAa---GGU----UCGUGCGG--UACC- -5'
13971 3' -51.8 NC_003521.1 + 151252 0.68 0.988957
Target:  5'- aGGCGAuaaacgGCGUUUCGGGUguGCGCUAcGGc -3'
miRNA:   3'- gCCGUU------UGCAAGGUUCG--UGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 150928 0.66 0.996909
Target:  5'- aCGGCGugUGggCCGAGCGCGgUCAg-- -3'
miRNA:   3'- -GCCGUuuGCaaGGUUCGUGC-GGUacc -5'
13971 3' -51.8 NC_003521.1 + 150792 0.67 0.994339
Target:  5'- gGGCGGGCG---CGAGC-CGCCAgGGg -3'
miRNA:   3'- gCCGUUUGCaagGUUCGuGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 150506 0.67 0.994258
Target:  5'- aCGGCGccGGCGgggCCcugcuagGAGCGggaGCCGUGGg -3'
miRNA:   3'- -GCCGU--UUGCaa-GG-------UUCGUg--CGGUACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.