miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 148094 0.69 0.975593
Target:  5'- aGGCAGACGgUCCGgAGguCGCgGgUGGa -3'
miRNA:   3'- gCCGUUUGCaAGGU-UCguGCGgU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 146552 0.66 0.995718
Target:  5'- gCGGCGgcAGCGUUCUcagucaaaaaaaaAAGCACGCUu--- -3'
miRNA:   3'- -GCCGU--UUGCAAGG-------------UUCGUGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 145871 0.66 0.99686
Target:  5'- gCGGCGGGCGgcgCCGacgacgaGGC-CGCCGgcggcgGGa -3'
miRNA:   3'- -GCCGUUUGCaa-GGU-------UCGuGCGGUa-----CC- -5'
13971 3' -51.8 NC_003521.1 + 144149 0.69 0.972992
Target:  5'- gGGCuccgAGGCGUugcucUUCAAGCACGCCGg-- -3'
miRNA:   3'- gCCG----UUUGCA-----AGGUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 142554 0.67 0.991453
Target:  5'- aCGGCuuguCGcccgCCAGGCuCGCCGUGc -3'
miRNA:   3'- -GCCGuuu-GCaa--GGUUCGuGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 142440 0.69 0.975593
Target:  5'- uCGGCAccAGCGUcUUCAGGCACGCg---- -3'
miRNA:   3'- -GCCGU--UUGCA-AGGUUCGUGCGguacc -5'
13971 3' -51.8 NC_003521.1 + 140050 0.66 0.998093
Target:  5'- gCGGCAGGaaggccuCGUUgcaCGAGUGCGCCA-GGc -3'
miRNA:   3'- -GCCGUUU-------GCAAg--GUUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 139765 0.7 0.970196
Target:  5'- aCGGCAGGa--UCCGgccgucggcGGC-CGCCAUGGa -3'
miRNA:   3'- -GCCGUUUgcaAGGU---------UCGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 138794 0.67 0.993481
Target:  5'- gCGGCAAccgccaggagauGCccUCCAuGGCGCGCCugAUGGc -3'
miRNA:   3'- -GCCGUU------------UGcaAGGU-UCGUGCGG--UACC- -5'
13971 3' -51.8 NC_003521.1 + 135511 0.67 0.994339
Target:  5'- gCGGCGAcgucgcgcgGCGUccCCAcGCcCGCCAUGa -3'
miRNA:   3'- -GCCGUU---------UGCAa-GGUuCGuGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 133754 0.68 0.990268
Target:  5'- cCGGCAGgcccgGCGaUUCCGGGgACGCgGcGGa -3'
miRNA:   3'- -GCCGUU-----UGC-AAGGUUCgUGCGgUaCC- -5'
13971 3' -51.8 NC_003521.1 + 132405 0.68 0.988819
Target:  5'- cCGGCAGACGcugUUUCGccugugcGGCgACGCCGcUGGu -3'
miRNA:   3'- -GCCGUUUGC---AAGGU-------UCG-UGCGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 131049 0.66 0.995782
Target:  5'- gCGGCGgcGGCGggCCucuGgACGCgGUGGc -3'
miRNA:   3'- -GCCGU--UUGCaaGGuu-CgUGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 130917 0.7 0.963994
Target:  5'- aGGCAacacGACGcugUCCuaccccCGCGCCGUGGa -3'
miRNA:   3'- gCCGU----UUGCa--AGGuuc---GUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 130754 0.68 0.988957
Target:  5'- uCGGCGGGCG---CGAGCgccGCGCCggGGg -3'
miRNA:   3'- -GCCGUUUGCaagGUUCG---UGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 130677 0.71 0.944689
Target:  5'- uGGC-GGCcUUCCAcgGGUACGCCGUGa -3'
miRNA:   3'- gCCGuUUGcAAGGU--UCGUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 128151 0.67 0.995104
Target:  5'- uCGGCGAAgGccUgCAGGCAgGgCGUGGg -3'
miRNA:   3'- -GCCGUUUgCa-AgGUUCGUgCgGUACC- -5'
13971 3' -51.8 NC_003521.1 + 127786 0.68 0.985251
Target:  5'- gCGGCGGccguagccgcACGUgcuccaugaucugCCAGGCGCGCagcuCGUGGa -3'
miRNA:   3'- -GCCGUU----------UGCAa------------GGUUCGUGCG----GUACC- -5'
13971 3' -51.8 NC_003521.1 + 127283 0.74 0.852196
Target:  5'- gCGGC--ACG-UCCGA-CACGCCGUGGu -3'
miRNA:   3'- -GCCGuuUGCaAGGUUcGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 126532 0.7 0.963662
Target:  5'- aGGCGAGCGcagCCAGcugugguacucguGCGCgaagGCCGUGGg -3'
miRNA:   3'- gCCGUUUGCaa-GGUU-------------CGUG----CGGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.