Results 101 - 120 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13971 | 3' | -51.8 | NC_003521.1 | + | 126155 | 0.68 | 0.988957 |
Target: 5'- aCGGCGAACaggUCCugcacgcGCACGcCCAUGu -3' miRNA: 3'- -GCCGUUUGca-AGGuu-----CGUGC-GGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 125193 | 0.7 | 0.970196 |
Target: 5'- uGGUGGAC--UCCAuGGC-CGCCAUGGu -3' miRNA: 3'- gCCGUUUGcaAGGU-UCGuGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 124841 | 0.66 | 0.996909 |
Target: 5'- -aGCAGAUuUUC---GCGCGCCAUGGg -3' miRNA: 3'- gcCGUUUGcAAGguuCGUGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 124097 | 0.67 | 0.994339 |
Target: 5'- gGGCGccGAC--UCCGGGaC-CGCCGUGGa -3' miRNA: 3'- gCCGU--UUGcaAGGUUC-GuGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 121459 | 0.66 | 0.996382 |
Target: 5'- cCGGCGGACaucCCcGGCGUGuCCAUGGa -3' miRNA: 3'- -GCCGUUUGcaaGGuUCGUGC-GGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 120548 | 0.69 | 0.975593 |
Target: 5'- gCGGCcGGCGgucCCGGGggaGCGCCcgGGg -3' miRNA: 3'- -GCCGuUUGCaa-GGUUCg--UGCGGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 120068 | 0.83 | 0.423502 |
Target: 5'- uGGCAGGcCGgcaUCCAGGCGCGCCAccUGGu -3' miRNA: 3'- gCCGUUU-GCa--AGGUUCGUGCGGU--ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 119980 | 0.69 | 0.978006 |
Target: 5'- gGGCGucGACGagCCGGGCgacauGCGCCGcUGGc -3' miRNA: 3'- gCCGU--UUGCaaGGUUCG-----UGCGGU-ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 119345 | 0.68 | 0.988957 |
Target: 5'- gGGCAGGgGUccggccUCCAuGGaCACGCCggGGa -3' miRNA: 3'- gCCGUUUgCA------AGGU-UC-GUGCGGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 119084 | 0.68 | 0.984191 |
Target: 5'- gGGCAAGCagguGUggCAGGCGCGCC-UGa -3' miRNA: 3'- gCCGUUUG----CAagGUUCGUGCGGuACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 118191 | 0.66 | 0.996382 |
Target: 5'- cCGGCAAAguCGgggccgCCGAGCGCGCgGc-- -3' miRNA: 3'- -GCCGUUU--GCaa----GGUUCGUGCGgUacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 117879 | 0.69 | 0.980239 |
Target: 5'- cCGGCGAGg---CCGAGCACGgCcgGGc -3' miRNA: 3'- -GCCGUUUgcaaGGUUCGUGCgGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 117061 | 0.68 | 0.990268 |
Target: 5'- aGGCGGccGCGgagCCGgcGGuCACGCCGUGc -3' miRNA: 3'- gCCGUU--UGCaa-GGU--UC-GUGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 116010 | 0.7 | 0.967198 |
Target: 5'- aGGagcAGCGUcUCCAGGC-CGCgGUGGa -3' miRNA: 3'- gCCgu-UUGCA-AGGUUCGuGCGgUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 116004 | 0.7 | 0.967198 |
Target: 5'- uCGcGCAggagcAGCGUcUCCAGGC-CGCgGUGGa -3' miRNA: 3'- -GC-CGU-----UUGCA-AGGUUCGuGCGgUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 115696 | 0.73 | 0.888685 |
Target: 5'- gGGCAAACuggCCAAGCugacgGCGgCCGUGGu -3' miRNA: 3'- gCCGUUUGcaaGGUUCG-----UGC-GGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 115225 | 0.66 | 0.997775 |
Target: 5'- uCGGCcGAgaGUUCCuccguguuguGCGcCGCCGUGGu -3' miRNA: 3'- -GCCGuUUg-CAAGGuu--------CGU-GCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 114712 | 0.75 | 0.793971 |
Target: 5'- cCGGCAcGACGagaucgaccgcuggaUCC-GGCACGCCGUGGg -3' miRNA: 3'- -GCCGU-UUGCa--------------AGGuUCGUGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 114633 | 0.69 | 0.978006 |
Target: 5'- uGGCcuACGUgaaCCGGGUGCGCaccgaCAUGGg -3' miRNA: 3'- gCCGuuUGCAa--GGUUCGUGCG-----GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 113975 | 0.68 | 0.988957 |
Target: 5'- aCGGCAGGCGgccggCCGGGCACcgGCUg--- -3' miRNA: 3'- -GCCGUUUGCaa---GGUUCGUG--CGGuacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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