miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 174666 0.69 0.980239
Target:  5'- aGGC-GGCGUUCUuAGcCACGUCAUGc -3'
miRNA:   3'- gCCGuUUGCAAGGuUC-GUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 117879 0.69 0.980239
Target:  5'- cCGGCGAGg---CCGAGCACGgCcgGGc -3'
miRNA:   3'- -GCCGUUUgcaaGGUUCGUGCgGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 57236 0.69 0.982298
Target:  5'- aGGCGAGCGgcUCucGCGCgGCCAguUGGc -3'
miRNA:   3'- gCCGUUUGCaaGGuuCGUG-CGGU--ACC- -5'
13971 3' -51.8 NC_003521.1 + 78872 0.69 0.982298
Target:  5'- cCGGUcGAUGa-CCAGGCGCGUCAgGGg -3'
miRNA:   3'- -GCCGuUUGCaaGGUUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 71530 0.69 0.982298
Target:  5'- cCGGCcGACGUcaCCGAGCcCGCCGc-- -3'
miRNA:   3'- -GCCGuUUGCAa-GGUUCGuGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 232282 0.68 0.98364
Target:  5'- aCGGUGGAUGUcgucgcgcccacggUCCGGGCACaaucaaCCGUGGu -3'
miRNA:   3'- -GCCGUUUGCA--------------AGGUUCGUGc-----GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 151566 0.68 0.984191
Target:  5'- gGGCGucuCGUgucaCCGcgucAGCACGCCcgAUGGg -3'
miRNA:   3'- gCCGUuu-GCAa---GGU----UCGUGCGG--UACC- -5'
13971 3' -51.8 NC_003521.1 + 76949 0.69 0.978006
Target:  5'- gCGGU--GCGUUCC-AGCAUGUCGcGGc -3'
miRNA:   3'- -GCCGuuUGCAAGGuUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 101989 0.69 0.977773
Target:  5'- aGGCGGugcagcuGCGUgUCCAGGCACagGgCGUGGu -3'
miRNA:   3'- gCCGUU-------UGCA-AGGUUCGUG--CgGUACC- -5'
13971 3' -51.8 NC_003521.1 + 142440 0.69 0.975593
Target:  5'- uCGGCAccAGCGUcUUCAGGCACGCg---- -3'
miRNA:   3'- -GCCGU--UUGCA-AGGUUCGUGCGguacc -5'
13971 3' -51.8 NC_003521.1 + 194158 0.7 0.963994
Target:  5'- uCGGCGGGCgGUUCCAu---CGCCcgGGu -3'
miRNA:   3'- -GCCGUUUG-CAAGGUucguGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 116010 0.7 0.967198
Target:  5'- aGGagcAGCGUcUCCAGGC-CGCgGUGGa -3'
miRNA:   3'- gCCgu-UUGCA-AGGUUCGuGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 213029 0.7 0.967198
Target:  5'- gGGCGAGCcggCCGAGCGgGCCGg-- -3'
miRNA:   3'- gCCGUUUGcaaGGUUCGUgCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 76194 0.7 0.970196
Target:  5'- aGGCGccacagGAUGggCCAgaagcccgccGGCACGCCcUGGg -3'
miRNA:   3'- gCCGU------UUGCaaGGU----------UCGUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 125193 0.7 0.970196
Target:  5'- uGGUGGAC--UCCAuGGC-CGCCAUGGu -3'
miRNA:   3'- gCCGUUUGcaAGGU-UCGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 232725 0.7 0.970196
Target:  5'- gGGCAGACGacUCCGAGC-CGCUg--- -3'
miRNA:   3'- gCCGUUUGCa-AGGUUCGuGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 59264 0.7 0.970196
Target:  5'- -uGCGGGCGUUCgUAAGCGCGCUAc-- -3'
miRNA:   3'- gcCGUUUGCAAG-GUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 91176 0.69 0.972174
Target:  5'- gGGCGcaugcgccucuggaAGCGguaCCGcgGGCGCGUCGUGGg -3'
miRNA:   3'- gCCGU--------------UUGCaa-GGU--UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 144149 0.69 0.972992
Target:  5'- gGGCuccgAGGCGUugcucUUCAAGCACGCCGg-- -3'
miRNA:   3'- gCCG----UUUGCA-----AGGUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 127786 0.68 0.985251
Target:  5'- gCGGCGGccguagccgcACGUgcuccaugaucugCCAGGCGCGCagcuCGUGGa -3'
miRNA:   3'- -GCCGUU----------UGCAa------------GGUUCGUGCG----GUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.