miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 105273 0.69 0.972992
Target:  5'- aGGCGGuugaGUUCCGucaacAGCGCGuUCAUGGc -3'
miRNA:   3'- gCCGUUug--CAAGGU-----UCGUGC-GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 104976 0.72 0.925103
Target:  5'- gGGCuGACGUUCCcGGUGC-UCAUGGg -3'
miRNA:   3'- gCCGuUUGCAAGGuUCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 14704 0.78 0.667005
Target:  5'- gGGCAucCGcgCCAAccuguGCACGCCGUGGu -3'
miRNA:   3'- gCCGUuuGCaaGGUU-----CGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 14743 0.69 0.972992
Target:  5'- gGGCGuGACGggCCGgccgcggccggGGCGCGCCuucGUGGc -3'
miRNA:   3'- gCCGU-UUGCaaGGU-----------UCGUGCGG---UACC- -5'
13971 3' -51.8 NC_003521.1 + 120068 0.83 0.423502
Target:  5'- uGGCAGGcCGgcaUCCAGGCGCGCCAccUGGu -3'
miRNA:   3'- gCCGUUU-GCa--AGGUUCGUGCGGU--ACC- -5'
13971 3' -51.8 NC_003521.1 + 76748 0.67 0.991453
Target:  5'- aGGCAugacGACGaccUCCgAGGCGaccguCGCCGUGGc -3'
miRNA:   3'- gCCGU----UUGCa--AGG-UUCGU-----GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 114712 0.75 0.793971
Target:  5'- cCGGCAcGACGagaucgaccgcuggaUCC-GGCACGCCGUGGg -3'
miRNA:   3'- -GCCGU-UUGCa--------------AGGuUCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 204623 0.68 0.988957
Target:  5'- uGGCGAcaGCGUUugagccgcucggCCAggugcgugGGCACGCCGUccGGg -3'
miRNA:   3'- gCCGUU--UGCAA------------GGU--------UCGUGCGGUA--CC- -5'
13971 3' -51.8 NC_003521.1 + 175196 0.68 0.987513
Target:  5'- uGGCGcGCGUcagcUCCucGCGgGCCGUGu -3'
miRNA:   3'- gCCGUuUGCA----AGGuuCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 119084 0.68 0.984191
Target:  5'- gGGCAAGCagguGUggCAGGCGCGCC-UGa -3'
miRNA:   3'- gCCGUUUG----CAagGUUCGUGCGGuACc -5'
13971 3' -51.8 NC_003521.1 + 114633 0.69 0.978006
Target:  5'- uGGCcuACGUgaaCCGGGUGCGCaccgaCAUGGg -3'
miRNA:   3'- gCCGuuUGCAa--GGUUCGUGCG-----GUACC- -5'
13971 3' -51.8 NC_003521.1 + 120548 0.69 0.975593
Target:  5'- gCGGCcGGCGgucCCGGGggaGCGCCcgGGg -3'
miRNA:   3'- -GCCGuUUGCaa-GGUUCg--UGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 148094 0.69 0.975593
Target:  5'- aGGCAGACGgUCCGgAGguCGCgGgUGGa -3'
miRNA:   3'- gCCGUUUGCaAGGU-UCguGCGgU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 174428 0.7 0.970196
Target:  5'- aGGCGgugcAGCGUUUCAcGCACGCgcUGGu -3'
miRNA:   3'- gCCGU----UUGCAAGGUuCGUGCGguACC- -5'
13971 3' -51.8 NC_003521.1 + 130917 0.7 0.963994
Target:  5'- aGGCAacacGACGcugUCCuaccccCGCGCCGUGGa -3'
miRNA:   3'- gCCGU----UUGCa--AGGuuc---GUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 130677 0.71 0.944689
Target:  5'- uGGC-GGCcUUCCAcgGGUACGCCGUGa -3'
miRNA:   3'- gCCGuUUGcAAGGU--UCGUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 168099 0.72 0.930353
Target:  5'- uCGGCGAagaccgaggagGCGUggaucgCCGAGgacgacaGCGCCGUGGg -3'
miRNA:   3'- -GCCGUU-----------UGCAa-----GGUUCg------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 169461 0.72 0.919617
Target:  5'- gCGGCGGguuCGUcgCCAGGCGCGUCGucguUGGc -3'
miRNA:   3'- -GCCGUUu--GCAa-GGUUCGUGCGGU----ACC- -5'
13971 3' -51.8 NC_003521.1 + 88063 0.73 0.89533
Target:  5'- aGGCGAcgcCGUUCCGcGCGCuGCcCGUGGa -3'
miRNA:   3'- gCCGUUu--GCAAGGUuCGUG-CG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 72582 0.73 0.874726
Target:  5'- gCGGCAAcGCGUUCCAggcgcucaagAGCGCGCUg--- -3'
miRNA:   3'- -GCCGUU-UGCAAGGU----------UCGUGCGGuacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.