miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 148094 0.69 0.975593
Target:  5'- aGGCAGACGgUCCGgAGguCGCgGgUGGa -3'
miRNA:   3'- gCCGUUUGCaAGGU-UCguGCGgU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 211451 0.69 0.975593
Target:  5'- uCGGCcucGCGgUCgGGGCAgGCCAUGa -3'
miRNA:   3'- -GCCGuu-UGCaAGgUUCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 200502 0.75 0.810802
Target:  5'- uGGCGGcGCGcaCCGAGCugGCCAaGGg -3'
miRNA:   3'- gCCGUU-UGCaaGGUUCGugCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 101997 0.73 0.888685
Target:  5'- aGGCcguAGCcgccgCCAucaGGCGCGCCAUGGa -3'
miRNA:   3'- gCCGu--UUGcaa--GGU---UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 181145 0.73 0.89533
Target:  5'- gGGCuccaccuGGCGUcugagcuccUCCAGGCGCGCCAg-- -3'
miRNA:   3'- gCCGu------UUGCA---------AGGUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 163205 0.72 0.924565
Target:  5'- uCGGCcGGCGccgUCaCGGGCGCGCCcggugacGUGGg -3'
miRNA:   3'- -GCCGuUUGCa--AG-GUUCGUGCGG-------UACC- -5'
13971 3' -51.8 NC_003521.1 + 53959 0.71 0.935367
Target:  5'- gGGCcGACGagCCGugcuGCACGCCGccgcUGGg -3'
miRNA:   3'- gCCGuUUGCaaGGUu---CGUGCGGU----ACC- -5'
13971 3' -51.8 NC_003521.1 + 7095 0.71 0.953085
Target:  5'- gCGGCGgcGGCGUccuccuucUCCAGGC-CGCUgagGUGGa -3'
miRNA:   3'- -GCCGU--UUGCA--------AGGUUCGuGCGG---UACC- -5'
13971 3' -51.8 NC_003521.1 + 103213 0.7 0.967198
Target:  5'- gCGGUAGGCG-UCC-AGCGCGCgGUa- -3'
miRNA:   3'- -GCCGUUUGCaAGGuUCGUGCGgUAcc -5'
13971 3' -51.8 NC_003521.1 + 139765 0.7 0.970196
Target:  5'- aCGGCAGGa--UCCGgccgucggcGGC-CGCCAUGGa -3'
miRNA:   3'- -GCCGUUUgcaAGGU---------UCGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 166673 0.66 0.995718
Target:  5'- gCGGCAccugggccccguGGCGcgCCAcgucguccugcacGGCGC-CCAUGGg -3'
miRNA:   3'- -GCCGU------------UUGCaaGGU-------------UCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 16262 0.67 0.995104
Target:  5'- gCGGCu-GCGcugccgcuggUUCCugcuGgGCGCCGUGGg -3'
miRNA:   3'- -GCCGuuUGC----------AAGGuu--CgUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 110735 0.68 0.984009
Target:  5'- cCGGCAGcugGCaGUUCCAcucggccagcgagAGCAgGCCGcGGa -3'
miRNA:   3'- -GCCGUU---UG-CAAGGU-------------UCGUgCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 658 0.68 0.985927
Target:  5'- aGGC-AACGUacgCuCAGGCcgACGCCAUGa -3'
miRNA:   3'- gCCGuUUGCAa--G-GUUCG--UGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 204623 0.68 0.988957
Target:  5'- uGGCGAcaGCGUUugagccgcucggCCAggugcgugGGCACGCCGUccGGg -3'
miRNA:   3'- gCCGUU--UGCAA------------GGU--------UCGUGCGGUA--CC- -5'
13971 3' -51.8 NC_003521.1 + 76748 0.67 0.991453
Target:  5'- aGGCAugacGACGaccUCCgAGGCGaccguCGCCGUGGc -3'
miRNA:   3'- gCCGU----UUGCa--AGG-UUCGU-----GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 93483 0.67 0.992522
Target:  5'- uCGGacgaGGACGaagagUCCGagggcgccuAGCGCGUCGUGGu -3'
miRNA:   3'- -GCCg---UUUGCa----AGGU---------UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 14214 0.67 0.99339
Target:  5'- gCGGCGagccccuGACGccgCUggGCuACGCCGUGa -3'
miRNA:   3'- -GCCGU-------UUGCaa-GGuuCG-UGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 40674 0.67 0.994339
Target:  5'- gGGCAAACGaUgUggGCGgcgUGCUGUGGa -3'
miRNA:   3'- gCCGUUUGCaAgGuuCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 192919 0.67 0.994339
Target:  5'- uGGaguuucuGCGUUCCcaGAGcCGCGCCcUGGg -3'
miRNA:   3'- gCCguu----UGCAAGG--UUC-GUGCGGuACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.