miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 202413 0.68 0.984191
Target:  5'- cCGGUGAAaag-CCAGGCGCaacCCAUGGg -3'
miRNA:   3'- -GCCGUUUgcaaGGUUCGUGc--GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 233012 0.68 0.988819
Target:  5'- uCGGUAGGCGUUcugcaccCCGA-CACGCCGUa- -3'
miRNA:   3'- -GCCGUUUGCAA-------GGUUcGUGCGGUAcc -5'
13971 3' -51.8 NC_003521.1 + 37849 0.68 0.988957
Target:  5'- cCGGaGGGCGUUacaCAGGCugGCCugcGGa -3'
miRNA:   3'- -GCCgUUUGCAAg--GUUCGugCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 39417 0.67 0.992522
Target:  5'- uGGCAcaGGCcgUCCAgucccguaGGCgGCGCCGUGGc -3'
miRNA:   3'- gCCGU--UUGcaAGGU--------UCG-UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 177785 0.67 0.992522
Target:  5'- gGGCcGACGgggccugUCCGcuGGUggGCGUCGUGGg -3'
miRNA:   3'- gCCGuUUGCa------AGGU--UCG--UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 40674 0.67 0.994339
Target:  5'- gGGCAAACGaUgUggGCGgcgUGCUGUGGa -3'
miRNA:   3'- gCCGUUUGCaAgGuuCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 192919 0.67 0.994339
Target:  5'- uGGaguuucuGCGUUCCcaGAGcCGCGCCcUGGg -3'
miRNA:   3'- gCCguu----UGCAAGG--UUC-GUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 139765 0.7 0.970196
Target:  5'- aCGGCAGGa--UCCGgccgucggcGGC-CGCCAUGGa -3'
miRNA:   3'- -GCCGUUUgcaAGGU---------UCGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 103213 0.7 0.967198
Target:  5'- gCGGUAGGCG-UCC-AGCGCGCgGUa- -3'
miRNA:   3'- -GCCGUUUGCaAGGuUCGUGCGgUAcc -5'
13971 3' -51.8 NC_003521.1 + 7095 0.71 0.953085
Target:  5'- gCGGCGgcGGCGUccuccuucUCCAGGC-CGCUgagGUGGa -3'
miRNA:   3'- -GCCGU--UUGCA--------AGGUUCGuGCGG---UACC- -5'
13971 3' -51.8 NC_003521.1 + 15722 0.66 0.996382
Target:  5'- uCGGCAucccgcacAACugGUUCCugcAGGUGCGCCcgGGc -3'
miRNA:   3'- -GCCGU--------UUG--CAAGG---UUCGUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 103686 0.66 0.996909
Target:  5'- uGGCGGGCGagUCCGAGCguccgaACGCgGgcucGGa -3'
miRNA:   3'- gCCGUUUGCa-AGGUUCG------UGCGgUa---CC- -5'
13971 3' -51.8 NC_003521.1 + 195329 0.66 0.996909
Target:  5'- aCGGC-GACGUguagaAGGC-UGCCGUGGu -3'
miRNA:   3'- -GCCGuUUGCAagg--UUCGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 95963 0.66 0.997372
Target:  5'- gCGGUAGGCGUacgaCAGGCGCaggaCCGUGa -3'
miRNA:   3'- -GCCGUUUGCAag--GUUCGUGc---GGUACc -5'
13971 3' -51.8 NC_003521.1 + 108634 0.66 0.997775
Target:  5'- uGGcCAGGCGgcugCCGaucAGCGCGCaCGUGu -3'
miRNA:   3'- gCC-GUUUGCaa--GGU---UCGUGCG-GUACc -5'
13971 3' -51.8 NC_003521.1 + 200502 0.75 0.810802
Target:  5'- uGGCGGcGCGcaCCGAGCugGCCAaGGg -3'
miRNA:   3'- gCCGUU-UGCaaGGUUCGugCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 101997 0.73 0.888685
Target:  5'- aGGCcguAGCcgccgCCAucaGGCGCGCCAUGGa -3'
miRNA:   3'- gCCGu--UUGcaa--GGU---UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 181145 0.73 0.89533
Target:  5'- gGGCuccaccuGGCGUcugagcuccUCCAGGCGCGCCAg-- -3'
miRNA:   3'- gCCGu------UUGCA---------AGGUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 163205 0.72 0.924565
Target:  5'- uCGGCcGGCGccgUCaCGGGCGCGCCcggugacGUGGg -3'
miRNA:   3'- -GCCGuUUGCa--AG-GUUCGUGCGG-------UACC- -5'
13971 3' -51.8 NC_003521.1 + 53959 0.71 0.935367
Target:  5'- gGGCcGACGagCCGugcuGCACGCCGccgcUGGg -3'
miRNA:   3'- gCCGuUUGCaaGGUu---CGUGCGGU----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.