miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 101841 0.69 0.974055
Target:  5'- uGGCGGGC--UCCGGGUuguggauggcggacuGCGUCAUGGg -3'
miRNA:   3'- gCCGUUUGcaAGGUUCG---------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 196805 0.69 0.972992
Target:  5'- aGGUAggUGggCgaGGGCAgGCCGUGGu -3'
miRNA:   3'- gCCGUuuGCaaGg-UUCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 237178 0.7 0.956942
Target:  5'- aGGCAGACGgcggcggCCGuGGCACGCUAg-- -3'
miRNA:   3'- gCCGUUUGCaa-----GGU-UCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 211451 0.69 0.975593
Target:  5'- uCGGCcucGCGgUCgGGGCAgGCCAUGa -3'
miRNA:   3'- -GCCGuu-UGCaAGgUUCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 167212 0.69 0.980239
Target:  5'- uGGCAGGCGcgCCGcaucuugguguAGgGCGCCA-GGu -3'
miRNA:   3'- gCCGUUUGCaaGGU-----------UCgUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 658 0.68 0.985927
Target:  5'- aGGC-AACGUacgCuCAGGCcgACGCCAUGa -3'
miRNA:   3'- gCCGuUUGCAa--G-GUUCG--UGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 175196 0.68 0.987513
Target:  5'- uGGCGcGCGUcagcUCCucGCGgGCCGUGu -3'
miRNA:   3'- gCCGUuUGCA----AGGuuCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 168099 0.72 0.930353
Target:  5'- uCGGCGAagaccgaggagGCGUggaucgCCGAGgacgacaGCGCCGUGGg -3'
miRNA:   3'- -GCCGUU-----------UGCAa-----GGUUCg------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 103213 0.7 0.967198
Target:  5'- gCGGUAGGCG-UCC-AGCGCGCgGUa- -3'
miRNA:   3'- -GCCGUUUGCaAGGuUCGUGCGgUAcc -5'
13971 3' -51.8 NC_003521.1 + 116004 0.7 0.967198
Target:  5'- uCGcGCAggagcAGCGUcUCCAGGC-CGCgGUGGa -3'
miRNA:   3'- -GC-CGU-----UUGCA-AGGUUCGuGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 113975 0.68 0.988957
Target:  5'- aCGGCAGGCGgccggCCGGGCACcgGCUg--- -3'
miRNA:   3'- -GCCGUUUGCaa---GGUUCGUG--CGGuacc -5'
13971 3' -51.8 NC_003521.1 + 126155 0.68 0.988957
Target:  5'- aCGGCGAACaggUCCugcacgcGCACGcCCAUGu -3'
miRNA:   3'- -GCCGUUUGca-AGGuu-----CGUGC-GGUACc -5'
13971 3' -51.8 NC_003521.1 + 119345 0.68 0.988957
Target:  5'- gGGCAGGgGUccggccUCCAuGGaCACGCCggGGa -3'
miRNA:   3'- gCCGUUUgCA------AGGU-UC-GUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 240137 0.66 0.998125
Target:  5'- cCGGCGGGCGcggaAAGCGCugGCuCAUGGc -3'
miRNA:   3'- -GCCGUUUGCaaggUUCGUG--CG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 76194 0.7 0.970196
Target:  5'- aGGCGccacagGAUGggCCAgaagcccgccGGCACGCCcUGGg -3'
miRNA:   3'- gCCGU------UUGCaaGGU----------UCGUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 130754 0.68 0.988957
Target:  5'- uCGGCGGGCG---CGAGCgccGCGCCggGGg -3'
miRNA:   3'- -GCCGUUUGCaagGUUCG---UGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 155298 0.68 0.988957
Target:  5'- gCGGC---UGUUCCucucGCACGCCGaGGu -3'
miRNA:   3'- -GCCGuuuGCAAGGuu--CGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 116010 0.7 0.967198
Target:  5'- aGGagcAGCGUcUCCAGGC-CGCgGUGGa -3'
miRNA:   3'- gCCgu-UUGCA-AGGUUCGuGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 213029 0.7 0.967198
Target:  5'- gGGCGAGCcggCCGAGCGgGCCGg-- -3'
miRNA:   3'- gCCGUUUGcaaGGUUCGUgCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 132405 0.68 0.988819
Target:  5'- cCGGCAGACGcugUUUCGccugugcGGCgACGCCGcUGGu -3'
miRNA:   3'- -GCCGUUUGC---AAGGU-------UCG-UGCGGU-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.