Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13972 | 5' | -55.4 | NC_003521.1 | + | 175690 | 0.66 | 0.965897 |
Target: 5'- gGUCCGCUugCGCCAUCUGuCG-GUACUc- -3' miRNA: 3'- -UAGGCGA--GUGGUGGAU-GCuCAUGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 11776 | 0.66 | 0.965897 |
Target: 5'- -aCgGCUCAUCugCUGCGAGgagucCCUc -3' miRNA: 3'- uaGgCGAGUGGugGAUGCUCau---GGAc -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 132323 | 0.66 | 0.965897 |
Target: 5'- -cCCGCgug-CGCCUGCGGGUGCUa- -3' miRNA: 3'- uaGGCGagugGUGGAUGCUCAUGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 9216 | 0.66 | 0.968945 |
Target: 5'- -aCCaGC-CACCACCUugGAG-AUUUGg -3' miRNA: 3'- uaGG-CGaGUGGUGGAugCUCaUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 121813 | 0.66 | 0.968945 |
Target: 5'- aAUCCGUguUCGCCGCCUuCGAGgagAgCUc -3' miRNA: 3'- -UAGGCG--AGUGGUGGAuGCUCa--UgGAc -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 62581 | 0.66 | 0.968945 |
Target: 5'- --aCGC-CGCCGCCUACcAGUGCgaGa -3' miRNA: 3'- uagGCGaGUGGUGGAUGcUCAUGgaC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 76268 | 0.66 | 0.968945 |
Target: 5'- --gCGCacgGCCGCCUGCGAG-ACCUc -3' miRNA: 3'- uagGCGag-UGGUGGAUGCUCaUGGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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