Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 105469 | 0.66 | 0.846453 |
Target: 5'- --cCGCCGcgGAGacggcgcgcGCGGGAGGGAGg -3' miRNA: 3'- agaGCGGCa-CUCcuu------CGCCCUCCCUU- -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 7975 | 0.67 | 0.780267 |
Target: 5'- ---gGCCGgGAGGGuccgcGGCGGcGGGGGAGg -3' miRNA: 3'- agagCGGCaCUCCU-----UCGCC-CUCCCUU- -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 128300 | 0.68 | 0.762363 |
Target: 5'- gCUCGCCGcggaaaucggUGuGGAAGCGGauaaAGGGGu -3' miRNA: 3'- aGAGCGGC----------ACuCCUUCGCCc---UCCCUu -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 155379 | 0.68 | 0.73474 |
Target: 5'- uUCUCGCCGgcgcggacgacGAGGccGGCGGGGGGc-- -3' miRNA: 3'- -AGAGCGGCa----------CUCCu-UCGCCCUCCcuu -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 208052 | 1.06 | 0.003206 |
Target: 5'- cUCUCGCCGUGAGGAAGCGGGAGGGAAg -3' miRNA: 3'- -AGAGCGGCACUCCUUCGCCCUCCCUU- -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 19085 | 0.76 | 0.310136 |
Target: 5'- ---gGCCGUGAGGAGGagggggacgGGGAGGGAGa -3' miRNA: 3'- agagCGGCACUCCUUCg--------CCCUCCCUU- -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 123355 | 0.76 | 0.316989 |
Target: 5'- -gUCGCCGggugugGAGGAGGCGGcGGGGGc- -3' miRNA: 3'- agAGCGGCa-----CUCCUUCGCC-CUCCCuu -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 13891 | 0.75 | 0.352956 |
Target: 5'- aUUUCGCCG-GGGGGcccGGCGcGGAGGGGg -3' miRNA: 3'- -AGAGCGGCaCUCCU---UCGC-CCUCCCUu -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 197275 | 0.74 | 0.383745 |
Target: 5'- --gCGCCGgcgGcGGGGAGCGGGAGGGc- -3' miRNA: 3'- agaGCGGCa--C-UCCUUCGCCCUCCCuu -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 123523 | 0.72 | 0.495168 |
Target: 5'- aCUcCGUCGUGGGGcAGCGuGAGGGGAg -3' miRNA: 3'- aGA-GCGGCACUCCuUCGCcCUCCCUU- -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 151105 | 0.71 | 0.580179 |
Target: 5'- gUCggGCCGcUGGGGGauGGCGGG-GGGAAu -3' miRNA: 3'- -AGagCGGC-ACUCCU--UCGCCCuCCCUU- -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 185721 | 0.69 | 0.671701 |
Target: 5'- gUCUCGCCGggugcgGAGGugaucgccGAGCGGGugcgccggagcgccuAGGGGc -3' miRNA: 3'- -AGAGCGGCa-----CUCC--------UUCGCCC---------------UCCCUu -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 239094 | 0.68 | 0.725359 |
Target: 5'- -gUCGCgG-GAGGAAcGCgagGGGAGGGGAc -3' miRNA: 3'- agAGCGgCaCUCCUU-CG---CCCUCCCUU- -5' |
|||||||
13974 | 3' | -59.7 | NC_003521.1 | + | 58959 | 0.65 | 0.859172 |
Target: 5'- gCUCGCCGaGGGGucgugcguGGCGaaucagccgcuagaGGAGGGGGa -3' miRNA: 3'- aGAGCGGCaCUCCu-------UCGC--------------CCUCCCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home