miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 93073 0.67 0.840116
Target:  5'- uGGCC-AUG-GGCCugugcuACGGCUUCGg- -3'
miRNA:   3'- uCCGGcUGCuCCGGu-----UGCCGAAGCag -5'
13975 3' -58.8 NC_003521.1 + 138319 0.67 0.832258
Target:  5'- uGGCCGACauGGaCCuGCGGCUgcgcgacggCGUCu -3'
miRNA:   3'- uCCGGCUGcuCC-GGuUGCCGAa--------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 122700 0.67 0.832258
Target:  5'- uGGGCgucuCGGCGGGGCUggaGGCGGUcgUgGUCg -3'
miRNA:   3'- -UCCG----GCUGCUCCGG---UUGCCGa-AgCAG- -5'
13975 3' -58.8 NC_003521.1 + 153176 0.67 0.829868
Target:  5'- uGGGCUGcgccuccagccuguGCGAGGCCuGCGGCggCa-- -3'
miRNA:   3'- -UCCGGC--------------UGCUCCGGuUGCCGaaGcag -5'
13975 3' -58.8 NC_003521.1 + 155250 0.67 0.824234
Target:  5'- uGGUgGugGGGGgCGGCGGCggCGg- -3'
miRNA:   3'- uCCGgCugCUCCgGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 68504 0.67 0.85531
Target:  5'- cGGCCGAgGccuGcGCCAGCGGCgUCa-- -3'
miRNA:   3'- uCCGGCUgCu--C-CGGUUGCCGaAGcag -5'
13975 3' -58.8 NC_003521.1 + 169312 0.67 0.861911
Target:  5'- cGGCCGGCGucGGUCGcagcgucGCGGCcggCGUg -3'
miRNA:   3'- uCCGGCUGCu-CCGGU-------UGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 86172 0.67 0.862635
Target:  5'- -uGCCGGCcucGGCCAGCGGCa-CGUg -3'
miRNA:   3'- ucCGGCUGcu-CCGGUUGCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 183897 0.67 0.862635
Target:  5'- gAGGCCGAggugcugGAGGCgGugcuGCGGCgcUGUCg -3'
miRNA:   3'- -UCCGGCUg------CUCCGgU----UGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 221817 0.67 0.840116
Target:  5'- -cGUCGGCGGGGCgGGCGuGuCUcccUCGUCg -3'
miRNA:   3'- ucCGGCUGCUCCGgUUGC-C-GA---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 169007 0.67 0.840116
Target:  5'- cGGgCGACGGGGCCGgcacgaucuugACGuGCgugaCGUCc -3'
miRNA:   3'- uCCgGCUGCUCCGGU-----------UGC-CGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 163710 0.67 0.840116
Target:  5'- cGGCC-ACGAGGCCGAaucCUgCGUCg -3'
miRNA:   3'- uCCGGcUGCUCCGGUUgccGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 130289 0.67 0.840116
Target:  5'- cGGCUaccugGGCGAGGCCG-CGGCgccgCG-Ca -3'
miRNA:   3'- uCCGG-----CUGCUCCGGUuGCCGaa--GCaG- -5'
13975 3' -58.8 NC_003521.1 + 88661 0.67 0.840116
Target:  5'- aGGGCCGccagguCGguGGGCCGGCGGCccggcUCGg- -3'
miRNA:   3'- -UCCGGCu-----GC--UCCGGUUGCCGa----AGCag -5'
13975 3' -58.8 NC_003521.1 + 118921 0.67 0.832258
Target:  5'- cGGCgccgCGGCGuGGgCGGCGGCguccCGUCa -3'
miRNA:   3'- uCCG----GCUGCuCCgGUUGCCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 102594 0.67 0.832258
Target:  5'- gGGGCUGGCGcuGGCC-ACGucgUCGUCg -3'
miRNA:   3'- -UCCGGCUGCu-CCGGuUGCcgaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 86197 0.67 0.832258
Target:  5'- cGGGCCacgGugGAGGCgAAgGGCggCGg- -3'
miRNA:   3'- -UCCGG---CugCUCCGgUUgCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 78802 0.67 0.824234
Target:  5'- cAGGUCGACGAgcGGCCcuggUGGCgccagUCGUa -3'
miRNA:   3'- -UCCGGCUGCU--CCGGuu--GCCGa----AGCAg -5'
13975 3' -58.8 NC_003521.1 + 115923 0.67 0.824234
Target:  5'- cGGUagaGGUGAGGCCAguACGGUUggggCGUCu -3'
miRNA:   3'- uCCGg--CUGCUCCGGU--UGCCGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 185617 0.67 0.862635
Target:  5'- -cGCCGACGGaGCCGGCGGaCUgccaUCGcCg -3'
miRNA:   3'- ucCGGCUGCUcCGGUUGCC-GA----AGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.