miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 14751 0.69 0.75494
Target:  5'- cGGGCCGGcCGcGGCCGggGCGcGcCUUCGUg -3'
miRNA:   3'- -UCCGGCU-GCuCCGGU--UGC-C-GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 23012 0.69 0.75494
Target:  5'- cGGCaucCGAgGAGGCCAAUGGgacgcauauCUUCGUg -3'
miRNA:   3'- uCCG---GCUgCUCCGGUUGCC---------GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 103832 0.69 0.745754
Target:  5'- uGGCUGuACaGGGGCCGcgucuCGGCcUCGUCc -3'
miRNA:   3'- uCCGGC-UG-CUCCGGUu----GCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 153444 0.69 0.727116
Target:  5'- cGGUCGcgcuCGuAGGCCAGCGGCU-CG-Ca -3'
miRNA:   3'- uCCGGCu---GC-UCCGGUUGCCGAaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 123974 0.69 0.717682
Target:  5'- cAGGUCGuCGcGGUCGGCGGC--CGUCa -3'
miRNA:   3'- -UCCGGCuGCuCCGGUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 197001 0.69 0.717682
Target:  5'- cGGCCGGCGGcGGCUGAccCGGCUgcugCGa- -3'
miRNA:   3'- uCCGGCUGCU-CCGGUU--GCCGAa---GCag -5'
13975 3' -58.8 NC_003521.1 + 122520 0.69 0.727116
Target:  5'- cGGCgGGC-AGGCCGGCGGCggUGg- -3'
miRNA:   3'- uCCGgCUGcUCCGGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 16289 0.69 0.736476
Target:  5'- gGGcGCCGugGGugccuaccGGcCCGGCGGCUUCuUCg -3'
miRNA:   3'- -UC-CGGCugCU--------CC-GGUUGCCGAAGcAG- -5'
13975 3' -58.8 NC_003521.1 + 176080 0.69 0.727116
Target:  5'- cGGCCGGCGucuuGGCC-ACGGCgUCc-- -3'
miRNA:   3'- uCCGGCUGCu---CCGGuUGCCGaAGcag -5'
13975 3' -58.8 NC_003521.1 + 94912 0.69 0.73087
Target:  5'- aAGGCCGuuuGCGAaccgccgcugcucccGccGCCGGCGGCcUCGUCg -3'
miRNA:   3'- -UCCGGC---UGCU---------------C--CGGUUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 73128 0.68 0.77301
Target:  5'- gAGGUgcugcaCGGCGGGGgCAGCGGCggCGg- -3'
miRNA:   3'- -UCCG------GCUGCUCCgGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 74571 0.68 0.781878
Target:  5'- gAGGgCGGCGAcGGagCGGCGGCgcggCGUCc -3'
miRNA:   3'- -UCCgGCUGCU-CCg-GUUGCCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 127411 0.68 0.790624
Target:  5'- uGGUCGugcagcgcguucACGuAGGCCGccaGCGGCU-CGUCg -3'
miRNA:   3'- uCCGGC------------UGC-UCCGGU---UGCCGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 54531 0.68 0.79924
Target:  5'- cGGcGCCGcUGGGGcCCGGCGGCUUuuugaCGUUg -3'
miRNA:   3'- -UC-CGGCuGCUCC-GGUUGCCGAA-----GCAG- -5'
13975 3' -58.8 NC_003521.1 + 239269 0.68 0.79924
Target:  5'- cGGGUguggCGcCGAGGCgAACGGCU-CGUa -3'
miRNA:   3'- -UCCG----GCuGCUCCGgUUGCCGAaGCAg -5'
13975 3' -58.8 NC_003521.1 + 42193 0.68 0.806877
Target:  5'- -aGCaCGGCGuuucccuGGGCCAGCGGCU--GUCg -3'
miRNA:   3'- ucCG-GCUGC-------UCCGGUUGCCGAagCAG- -5'
13975 3' -58.8 NC_003521.1 + 137245 0.68 0.807718
Target:  5'- --aCCGGcCGGGGCCGACGGCggcagCGg- -3'
miRNA:   3'- uccGGCU-GCUCCGGUUGCCGaa---GCag -5'
13975 3' -58.8 NC_003521.1 + 212501 0.68 0.814397
Target:  5'- uGGCCGACGAgaccacguaGGCCuggaugaugaGGCUcUUGUCg -3'
miRNA:   3'- uCCGGCUGCU---------CCGGuug-------CCGA-AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 148896 0.68 0.816052
Target:  5'- uGGCCGACgccgagGAGcGCCGccGCGGCaUCGa- -3'
miRNA:   3'- uCCGGCUG------CUC-CGGU--UGCCGaAGCag -5'
13975 3' -58.8 NC_003521.1 + 427 0.68 0.816052
Target:  5'- -uGCUGGCGAGGCCAAgcCGGCg--GUa -3'
miRNA:   3'- ucCGGCUGCUCCGGUU--GCCGaagCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.