Results 101 - 120 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13975 | 3' | -58.8 | NC_003521.1 | + | 118921 | 0.67 | 0.832258 |
Target: 5'- cGGCgccgCGGCGuGGgCGGCGGCguccCGUCa -3' miRNA: 3'- uCCG----GCUGCuCCgGUUGCCGaa--GCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 86197 | 0.67 | 0.832258 |
Target: 5'- cGGGCCacgGugGAGGCgAAgGGCggCGg- -3' miRNA: 3'- -UCCGG---CugCUCCGgUUgCCGaaGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 78802 | 0.67 | 0.824234 |
Target: 5'- cAGGUCGACGAgcGGCCcuggUGGCgccagUCGUa -3' miRNA: 3'- -UCCGGCUGCU--CCGGuu--GCCGa----AGCAg -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 115923 | 0.67 | 0.824234 |
Target: 5'- cGGUagaGGUGAGGCCAguACGGUUggggCGUCu -3' miRNA: 3'- uCCGg--CUGCUCCGGU--UGCCGAa---GCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 88661 | 0.67 | 0.840116 |
Target: 5'- aGGGCCGccagguCGguGGGCCGGCGGCccggcUCGg- -3' miRNA: 3'- -UCCGGCu-----GC--UCCGGUUGCCGa----AGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 221817 | 0.67 | 0.840116 |
Target: 5'- -cGUCGGCGGGGCgGGCGuGuCUcccUCGUCg -3' miRNA: 3'- ucCGGCUGCUCCGgUUGC-C-GA---AGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 88063 | 0.67 | 0.85531 |
Target: 5'- gAGGUCG-CGGuGGUCGGCGGCgccCGUg -3' miRNA: 3'- -UCCGGCuGCU-CCGGUUGCCGaa-GCAg -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 214986 | 0.67 | 0.862635 |
Target: 5'- cGGCCaGGgGGGugcgaGCCAGCGGCgucUCGUa -3' miRNA: 3'- uCCGG-CUgCUC-----CGGUUGCCGa--AGCAg -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 69263 | 0.67 | 0.862635 |
Target: 5'- uGGCCGACGuGGCaAGCGGUc-UGUUu -3' miRNA: 3'- uCCGGCUGCuCCGgUUGCCGaaGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 17752 | 0.67 | 0.862635 |
Target: 5'- gAGGCCGGgGAacuGGCCGuaccgccgGCGGCggacgGUCa -3' miRNA: 3'- -UCCGGCUgCU---CCGGU--------UGCCGaag--CAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 89821 | 0.67 | 0.85531 |
Target: 5'- -cGCCG-UGucGGCCGACGGCguUUCGUUc -3' miRNA: 3'- ucCGGCuGCu-CCGGUUGCCG--AAGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 45307 | 0.67 | 0.85531 |
Target: 5'- aGGaGCCGGagccCGAgcuGGCCGACGGCUaCGa- -3' miRNA: 3'- -UC-CGGCU----GCU---CCGGUUGCCGAaGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 207058 | 0.67 | 0.85531 |
Target: 5'- cAGGCCGgagGCGuugcaGGGCaggaGACGGCUgaccUGUCg -3' miRNA: 3'- -UCCGGC---UGC-----UCCGg---UUGCCGAa---GCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 128262 | 0.67 | 0.85531 |
Target: 5'- uAGGCCGugGuGGgCAGCGcGUUgcggauggUGUCg -3' miRNA: 3'- -UCCGGCugCuCCgGUUGC-CGAa-------GCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 100131 | 0.67 | 0.854568 |
Target: 5'- cGGCUGGCGguccugcgggaAGGCCGugGgGCUcuugaggUCGUUg -3' miRNA: 3'- uCCGGCUGC-----------UCCGGUugC-CGA-------AGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 168532 | 0.67 | 0.847802 |
Target: 5'- cAGGCUGGC--GGCCAgcGCGGCggCGg- -3' miRNA: 3'- -UCCGGCUGcuCCGGU--UGCCGaaGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 69860 | 0.67 | 0.840116 |
Target: 5'- -cGCCGAUGAGGCCGcCGcGCagCGcCa -3' miRNA: 3'- ucCGGCUGCUCCGGUuGC-CGaaGCaG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 81192 | 0.67 | 0.840116 |
Target: 5'- cAGGCCucGGCGAucugGGCCAAa-GCUUUGUUg -3' miRNA: 3'- -UCCGG--CUGCU----CCGGUUgcCGAAGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 30205 | 0.67 | 0.840116 |
Target: 5'- aAGGCCGAcucCGAgaucGGCCGGCcGUUggCGUCg -3' miRNA: 3'- -UCCGGCU---GCU----CCGGUUGcCGAa-GCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 102594 | 0.67 | 0.832258 |
Target: 5'- gGGGCUGGCGcuGGCC-ACGucgUCGUCg -3' miRNA: 3'- -UCCGGCUGCu-CCGGuUGCcgaAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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