miRNA display CGI


Results 81 - 100 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 160325 0.68 0.790624
Target:  5'- cGGaGCCGugGGcGGCgCggUGGCcuccgUCGUCg -3'
miRNA:   3'- -UC-CGGCugCU-CCG-GuuGCCGa----AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 127411 0.68 0.790624
Target:  5'- uGGUCGugcagcgcguucACGuAGGCCGccaGCGGCU-CGUCg -3'
miRNA:   3'- uCCGGC------------UGC-UCCGGU---UGCCGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 117469 0.68 0.790624
Target:  5'- cGGCUGuCgGAGGCCAcggccGCGGCgcuggggcCGUCg -3'
miRNA:   3'- uCCGGCuG-CUCCGGU-----UGCCGaa------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 239269 0.68 0.79924
Target:  5'- cGGGUguggCGcCGAGGCgAACGGCU-CGUa -3'
miRNA:   3'- -UCCG----GCuGCUCCGgUUGCCGAaGCAg -5'
13975 3' -58.8 NC_003521.1 + 54531 0.68 0.79924
Target:  5'- cGGcGCCGcUGGGGcCCGGCGGCUUuuugaCGUUg -3'
miRNA:   3'- -UC-CGGCuGCUCC-GGUUGCCGAA-----GCAG- -5'
13975 3' -58.8 NC_003521.1 + 39041 0.68 0.79924
Target:  5'- cGGGUguggCGcCGAGGCgAACGGCU-CGUa -3'
miRNA:   3'- -UCCG----GCuGCUCCGgUUGCCGAaGCAg -5'
13975 3' -58.8 NC_003521.1 + 31625 0.68 0.79924
Target:  5'- aGGGCCacCGcGGCCGACGGUgggGUCa -3'
miRNA:   3'- -UCCGGcuGCuCCGGUUGCCGaagCAG- -5'
13975 3' -58.8 NC_003521.1 + 42193 0.68 0.806877
Target:  5'- -aGCaCGGCGuuucccuGGGCCAGCGGCU--GUCg -3'
miRNA:   3'- ucCG-GCUGC-------UCCGGUUGCCGAagCAG- -5'
13975 3' -58.8 NC_003521.1 + 137245 0.68 0.807718
Target:  5'- --aCCGGcCGGGGCCGACGGCggcagCGg- -3'
miRNA:   3'- uccGGCU-GCUCCGGUUGCCGaa---GCag -5'
13975 3' -58.8 NC_003521.1 + 18783 0.68 0.807718
Target:  5'- cAGGCgGugGAgGGCCAGCGcuGCUuucgCGUg -3'
miRNA:   3'- -UCCGgCugCU-CCGGUUGC--CGAa---GCAg -5'
13975 3' -58.8 NC_003521.1 + 155501 0.68 0.807718
Target:  5'- cGGGCCG-CG-GGCCAaggcuggagcgACGGCgaCGUg -3'
miRNA:   3'- -UCCGGCuGCuCCGGU-----------UGCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 212715 0.68 0.807718
Target:  5'- cGGGCCucgaucuugGGCGAGcGCCugcuCGGCUuccccgccgUCGUCc -3'
miRNA:   3'- -UCCGG---------CUGCUC-CGGuu--GCCGA---------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 31558 0.68 0.813568
Target:  5'- gAGGCCGAauggcgcgucCGGGGCUcguucuuccccgaaGACGGCUuacUCGg- -3'
miRNA:   3'- -UCCGGCU----------GCUCCGG--------------UUGCCGA---AGCag -5'
13975 3' -58.8 NC_003521.1 + 212501 0.68 0.814397
Target:  5'- uGGCCGACGAgaccacguaGGCCuggaugaugaGGCUcUUGUCg -3'
miRNA:   3'- uCCGGCUGCU---------CCGGuug-------CCGA-AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 427 0.68 0.816052
Target:  5'- -uGCUGGCGAGGCCAAgcCGGCg--GUa -3'
miRNA:   3'- ucCGGCUGCUCCGGUU--GCCGaagCAg -5'
13975 3' -58.8 NC_003521.1 + 148896 0.68 0.816052
Target:  5'- uGGCCGACgccgagGAGcGCCGccGCGGCaUCGa- -3'
miRNA:   3'- uCCGGCUG------CUC-CGGU--UGCCGaAGCag -5'
13975 3' -58.8 NC_003521.1 + 40749 0.68 0.816052
Target:  5'- -uGCUGGCGAGGCCAAgcCGGCg--GUa -3'
miRNA:   3'- ucCGGCUGCUCCGGUU--GCCGaagCAg -5'
13975 3' -58.8 NC_003521.1 + 115923 0.67 0.824234
Target:  5'- cGGUagaGGUGAGGCCAguACGGUUggggCGUCu -3'
miRNA:   3'- uCCGg--CUGCUCCGGU--UGCCGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 78802 0.67 0.824234
Target:  5'- cAGGUCGACGAgcGGCCcuggUGGCgccagUCGUa -3'
miRNA:   3'- -UCCGGCUGCU--CCGGuu--GCCGa----AGCAg -5'
13975 3' -58.8 NC_003521.1 + 95561 0.67 0.824234
Target:  5'- uGGCCGcCGAGGCCGAggaGGCg----- -3'
miRNA:   3'- uCCGGCuGCUCCGGUUg--CCGaagcag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.