miRNA display CGI


Results 121 - 140 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 15244 0.67 0.847041
Target:  5'- gAGGCCGcCGAGcGCCAggacgacACGGgUcccCGUCu -3'
miRNA:   3'- -UCCGGCuGCUC-CGGU-------UGCCgAa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 168532 0.67 0.847802
Target:  5'- cAGGCUGGC--GGCCAgcGCGGCggCGg- -3'
miRNA:   3'- -UCCGGCUGcuCCGGU--UGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 13433 0.67 0.847802
Target:  5'- cGGUCGcCGAGGaCGACGGa--CGUCa -3'
miRNA:   3'- uCCGGCuGCUCCgGUUGCCgaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 104975 0.67 0.847802
Target:  5'- aGGGCUGACGuucccGGuGCuCAugGGCacgggagcgUUCGUCg -3'
miRNA:   3'- -UCCGGCUGC-----UC-CG-GUugCCG---------AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 100131 0.67 0.854568
Target:  5'- cGGCUGGCGguccugcgggaAGGCCGugGgGCUcuugaggUCGUUg -3'
miRNA:   3'- uCCGGCUGC-----------UCCGGUugC-CGA-------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 68504 0.67 0.85531
Target:  5'- cGGCCGAgGccuGcGCCAGCGGCgUCa-- -3'
miRNA:   3'- uCCGGCUgCu--C-CGGUUGCCGaAGcag -5'
13975 3' -58.8 NC_003521.1 + 152199 0.67 0.85531
Target:  5'- uGGGCUgugacccgGACGAGGUC-ACGGCgcaCGUg -3'
miRNA:   3'- -UCCGG--------CUGCUCCGGuUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 224124 0.67 0.85531
Target:  5'- -cGUCGACGAuguccaGGCCGugGGCcgaGUCg -3'
miRNA:   3'- ucCGGCUGCU------CCGGUugCCGaagCAG- -5'
13975 3' -58.8 NC_003521.1 + 89821 0.67 0.85531
Target:  5'- -cGCCG-UGucGGCCGACGGCguUUCGUUc -3'
miRNA:   3'- ucCGGCuGCu-CCGGUUGCCG--AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 123216 0.67 0.85531
Target:  5'- cGGGUagGACGGGGgCGGCGGUaggUgGUCg -3'
miRNA:   3'- -UCCGg-CUGCUCCgGUUGCCGa--AgCAG- -5'
13975 3' -58.8 NC_003521.1 + 207058 0.67 0.85531
Target:  5'- cAGGCCGgagGCGuugcaGGGCaggaGACGGCUgaccUGUCg -3'
miRNA:   3'- -UCCGGC---UGC-----UCCGg---UUGCCGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 128262 0.67 0.85531
Target:  5'- uAGGCCGugGuGGgCAGCGcGUUgcggauggUGUCg -3'
miRNA:   3'- -UCCGGCugCuCCgGUUGC-CGAa-------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 88063 0.67 0.85531
Target:  5'- gAGGUCG-CGGuGGUCGGCGGCgccCGUg -3'
miRNA:   3'- -UCCGGCuGCU-CCGGUUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 45307 0.67 0.85531
Target:  5'- aGGaGCCGGagccCGAgcuGGCCGACGGCUaCGa- -3'
miRNA:   3'- -UC-CGGCU----GCU---CCGGUUGCCGAaGCag -5'
13975 3' -58.8 NC_003521.1 + 61576 0.67 0.858263
Target:  5'- uGGCCGGCGAguucaggcgccagaaGGCCcGCGGCg----- -3'
miRNA:   3'- uCCGGCUGCU---------------CCGGuUGCCGaagcag -5'
13975 3' -58.8 NC_003521.1 + 121919 0.67 0.861911
Target:  5'- cGGcGCCGACGAGGgCGAgGaccucauGCU-CGUCa -3'
miRNA:   3'- -UC-CGGCUGCUCCgGUUgC-------CGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 169312 0.67 0.861911
Target:  5'- cGGCCGGCGucGGUCGcagcgucGCGGCcggCGUg -3'
miRNA:   3'- uCCGGCUGCu-CCGGU-------UGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 153112 0.67 0.862635
Target:  5'- cGGGCgCGcGCGAcGGCagcaGGCGGCUUUGg- -3'
miRNA:   3'- -UCCG-GC-UGCU-CCGg---UUGCCGAAGCag -5'
13975 3' -58.8 NC_003521.1 + 214986 0.67 0.862635
Target:  5'- cGGCCaGGgGGGugcgaGCCAGCGGCgucUCGUa -3'
miRNA:   3'- uCCGG-CUgCUC-----CGGUUGCCGa--AGCAg -5'
13975 3' -58.8 NC_003521.1 + 69263 0.67 0.862635
Target:  5'- uGGCCGACGuGGCaAGCGGUc-UGUUu -3'
miRNA:   3'- uCCGGCUGCuCCGgUUGCCGaaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.