Results 61 - 80 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13975 | 3' | -58.8 | NC_003521.1 | + | 104975 | 0.67 | 0.847802 |
Target: 5'- aGGGCUGACGuucccGGuGCuCAugGGCacgggagcgUUCGUCg -3' miRNA: 3'- -UCCGGCUGC-----UC-CG-GUugCCG---------AAGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 15244 | 0.67 | 0.847041 |
Target: 5'- gAGGCCGcCGAGcGCCAggacgacACGGgUcccCGUCu -3' miRNA: 3'- -UCCGGCuGCUC-CGGU-------UGCCgAa--GCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 69860 | 0.67 | 0.840116 |
Target: 5'- -cGCCGAUGAGGCCGcCGcGCagCGcCa -3' miRNA: 3'- ucCGGCUGCUCCGGUuGC-CGaaGCaG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 98478 | 0.67 | 0.840116 |
Target: 5'- cGGCCG-CGGcGGCCGugGCGGCggccUCG-Cg -3' miRNA: 3'- uCCGGCuGCU-CCGGU--UGCCGa---AGCaG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 93073 | 0.67 | 0.840116 |
Target: 5'- uGGCC-AUG-GGCCugugcuACGGCUUCGg- -3' miRNA: 3'- uCCGGcUGCuCCGGu-----UGCCGAAGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 100198 | 0.67 | 0.840116 |
Target: 5'- cAGGCC-ACGAGcGCCAuauuuACGGCcUCcUCg -3' miRNA: 3'- -UCCGGcUGCUC-CGGU-----UGCCGaAGcAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 163710 | 0.67 | 0.840116 |
Target: 5'- cGGCC-ACGAGGCCGAaucCUgCGUCg -3' miRNA: 3'- uCCGGcUGCUCCGGUUgccGAaGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 88661 | 0.67 | 0.840116 |
Target: 5'- aGGGCCGccagguCGguGGGCCGGCGGCccggcUCGg- -3' miRNA: 3'- -UCCGGCu-----GC--UCCGGUUGCCGa----AGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 130289 | 0.67 | 0.840116 |
Target: 5'- cGGCUaccugGGCGAGGCCG-CGGCgccgCG-Ca -3' miRNA: 3'- uCCGG-----CUGCUCCGGUuGCCGaa--GCaG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 81192 | 0.67 | 0.840116 |
Target: 5'- cAGGCCucGGCGAucugGGCCAAa-GCUUUGUUg -3' miRNA: 3'- -UCCGG--CUGCU----CCGGUUgcCGAAGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 30205 | 0.67 | 0.840116 |
Target: 5'- aAGGCCGAcucCGAgaucGGCCGGCcGUUggCGUCg -3' miRNA: 3'- -UCCGGCU---GCU----CCGGUUGcCGAa-GCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 221817 | 0.67 | 0.840116 |
Target: 5'- -cGUCGGCGGGGCgGGCGuGuCUcccUCGUCg -3' miRNA: 3'- ucCGGCUGCUCCGgUUGC-C-GA---AGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 169007 | 0.67 | 0.840116 |
Target: 5'- cGGgCGACGGGGCCGgcacgaucuugACGuGCgugaCGUCc -3' miRNA: 3'- uCCgGCUGCUCCGGU-----------UGC-CGaa--GCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 102594 | 0.67 | 0.832258 |
Target: 5'- gGGGCUGGCGcuGGCC-ACGucgUCGUCg -3' miRNA: 3'- -UCCGGCUGCu-CCGGuUGCcgaAGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 86197 | 0.67 | 0.832258 |
Target: 5'- cGGGCCacgGugGAGGCgAAgGGCggCGg- -3' miRNA: 3'- -UCCGG---CugCUCCGgUUgCCGaaGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 138319 | 0.67 | 0.832258 |
Target: 5'- uGGCCGACauGGaCCuGCGGCUgcgcgacggCGUCu -3' miRNA: 3'- uCCGGCUGcuCC-GGuUGCCGAa--------GCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 169443 | 0.67 | 0.832258 |
Target: 5'- cGGaCGACGGcGUCGGCGGCggcgggUUCGUCg -3' miRNA: 3'- uCCgGCUGCUcCGGUUGCCG------AAGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 122700 | 0.67 | 0.832258 |
Target: 5'- uGGGCgucuCGGCGGGGCUggaGGCGGUcgUgGUCg -3' miRNA: 3'- -UCCG----GCUGCUCCGG---UUGCCGa-AgCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 118921 | 0.67 | 0.832258 |
Target: 5'- cGGCgccgCGGCGuGGgCGGCGGCguccCGUCa -3' miRNA: 3'- uCCG----GCUGCuCCgGUUGCCGaa--GCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 153176 | 0.67 | 0.829868 |
Target: 5'- uGGGCUGcgccuccagccuguGCGAGGCCuGCGGCggCa-- -3' miRNA: 3'- -UCCGGC--------------UGCUCCGGuUGCCGaaGcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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