miRNA display CGI


Results 101 - 120 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 127411 0.68 0.790624
Target:  5'- uGGUCGugcagcgcguucACGuAGGCCGccaGCGGCU-CGUCg -3'
miRNA:   3'- uCCGGC------------UGC-UCCGGU---UGCCGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 117469 0.68 0.790624
Target:  5'- cGGCUGuCgGAGGCCAcggccGCGGCgcuggggcCGUCg -3'
miRNA:   3'- uCCGGCuG-CUCCGGU-----UGCCGaa------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 108913 0.68 0.790624
Target:  5'- uGGCCGACagugcguaGAuGGCCAucaucagugcGCGGCUgucgguggCGUCu -3'
miRNA:   3'- uCCGGCUG--------CU-CCGGU----------UGCCGAa-------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 210424 0.68 0.781878
Target:  5'- uGGUCGGCGuGGGCggCGACGGCagCGUa -3'
miRNA:   3'- uCCGGCUGC-UCCG--GUUGCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 92235 0.68 0.781878
Target:  5'- aGGGcCCGACGGGcGCCGcGCGGuCUUuuggccggucgCGUCg -3'
miRNA:   3'- -UCC-GGCUGCUC-CGGU-UGCC-GAA-----------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 172393 0.68 0.781878
Target:  5'- cGGuuGAgGGGcGCCGGCGGagcCGUCg -3'
miRNA:   3'- uCCggCUgCUC-CGGUUGCCgaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 155391 0.68 0.781878
Target:  5'- cGGaCGACGAGGCCGGCGGg------ -3'
miRNA:   3'- uCCgGCUGCUCCGGUUGCCgaagcag -5'
13975 3' -58.8 NC_003521.1 + 120811 0.68 0.781878
Target:  5'- aAGGCCGACcuGAucaacuacaGCCAGCGGCgcaUGUCg -3'
miRNA:   3'- -UCCGGCUG--CUc--------CGGUUGCCGaa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 74571 0.68 0.781878
Target:  5'- gAGGgCGGCGAcGGagCGGCGGCgcggCGUCc -3'
miRNA:   3'- -UCCgGCUGCU-CCg-GUUGCCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 135631 0.68 0.778345
Target:  5'- cGGGCgGAUcccacgaucggcggGGGGCCcagcgucGGCGGCgUCGUCa -3'
miRNA:   3'- -UCCGgCUG--------------CUCCGG-------UUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 91671 0.68 0.77301
Target:  5'- cGGaCGACGAGGUgGccACGGCgUCGUg -3'
miRNA:   3'- uCCgGCUGCUCCGgU--UGCCGaAGCAg -5'
13975 3' -58.8 NC_003521.1 + 73128 0.68 0.77301
Target:  5'- gAGGUgcugcaCGGCGGGGgCAGCGGCggCGg- -3'
miRNA:   3'- -UCCG------GCUGCUCCgGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 170295 0.69 0.764029
Target:  5'- cGGCCGGcCGAGcGCgaGGCGGUcaCGUCg -3'
miRNA:   3'- uCCGGCU-GCUC-CGg-UUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 16688 0.69 0.764029
Target:  5'- uGGcCCGACucGGCCcACGGCcuggacaUCGUCg -3'
miRNA:   3'- uCC-GGCUGcuCCGGuUGCCGa------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 223735 0.69 0.763125
Target:  5'- cGGGuCCGgugGCGGGaacgugggucgccGCCAGCGGUaUCGUCg -3'
miRNA:   3'- -UCC-GGC---UGCUC-------------CGGUUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 90490 0.69 0.75494
Target:  5'- cGGCCGAgaCGGGGCCGuguccCGaGCgucCGUCg -3'
miRNA:   3'- uCCGGCU--GCUCCGGUu----GC-CGaa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 14751 0.69 0.75494
Target:  5'- cGGGCCGGcCGcGGCCGggGCGcGcCUUCGUg -3'
miRNA:   3'- -UCCGGCU-GCuCCGGU--UGC-C-GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 23012 0.69 0.75494
Target:  5'- cGGCaucCGAgGAGGCCAAUGGgacgcauauCUUCGUg -3'
miRNA:   3'- uCCG---GCUgCUCCGGUUGCC---------GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 103832 0.69 0.745754
Target:  5'- uGGCUGuACaGGGGCCGcgucuCGGCcUCGUCc -3'
miRNA:   3'- uCCGGC-UG-CUCCGGUu----GCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 16289 0.69 0.736476
Target:  5'- gGGcGCCGugGGugccuaccGGcCCGGCGGCUUCuUCg -3'
miRNA:   3'- -UC-CGGCugCU--------CC-GGUUGCCGAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.