miRNA display CGI


Results 41 - 60 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 54531 0.68 0.79924
Target:  5'- cGGcGCCGcUGGGGcCCGGCGGCUUuuugaCGUUg -3'
miRNA:   3'- -UC-CGGCuGCUCC-GGUUGCCGAA-----GCAG- -5'
13975 3' -58.8 NC_003521.1 + 57144 0.66 0.883458
Target:  5'- uAGGUCu-CGucGGCCAcgcGCGGCaggUCGUCg -3'
miRNA:   3'- -UCCGGcuGCu-CCGGU---UGCCGa--AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 59094 0.7 0.669671
Target:  5'- cGGCCG-CuuGGCCAGCGuGCgcgCGUCc -3'
miRNA:   3'- uCCGGCuGcuCCGGUUGC-CGaa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 59752 0.66 0.883458
Target:  5'- cGGGCCGGaccuGGUgAGCaGCUUCGUg -3'
miRNA:   3'- -UCCGGCUgcu-CCGgUUGcCGAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 61576 0.67 0.858263
Target:  5'- uGGCCGGCGAguucaggcgccagaaGGCCcGCGGCg----- -3'
miRNA:   3'- uCCGGCUGCU---------------CCGGuUGCCGaagcag -5'
13975 3' -58.8 NC_003521.1 + 68504 0.67 0.85531
Target:  5'- cGGCCGAgGccuGcGCCAGCGGCgUCa-- -3'
miRNA:   3'- uCCGGCUgCu--C-CGGUUGCCGaAGcag -5'
13975 3' -58.8 NC_003521.1 + 69263 0.67 0.862635
Target:  5'- uGGCCGACGuGGCaAGCGGUc-UGUUu -3'
miRNA:   3'- uCCGGCUGCuCCGgUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 69860 0.67 0.840116
Target:  5'- -cGCCGAUGAGGCCGcCGcGCagCGcCa -3'
miRNA:   3'- ucCGGCUGCUCCGGUuGC-CGaaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 72852 0.72 0.54373
Target:  5'- gGGGCggCGACGguAGGCaCGGCGGUcgUCGUCa -3'
miRNA:   3'- -UCCG--GCUGC--UCCG-GUUGCCGa-AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 72983 0.71 0.64047
Target:  5'- -aGCCGACGA-GCCcGCGGCggUCGUg -3'
miRNA:   3'- ucCGGCUGCUcCGGuUGCCGa-AGCAg -5'
13975 3' -58.8 NC_003521.1 + 73128 0.68 0.77301
Target:  5'- gAGGUgcugcaCGGCGGGGgCAGCGGCggCGg- -3'
miRNA:   3'- -UCCG------GCUGCUCCgGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 74571 0.68 0.781878
Target:  5'- gAGGgCGGCGAcGGagCGGCGGCgcggCGUCc -3'
miRNA:   3'- -UCCgGCUGCU-CCg-GUUGCCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 75633 0.65 0.901857
Target:  5'- -cGCCGACGAugacgacGGCaaCAGCGGCgcaGUCc -3'
miRNA:   3'- ucCGGCUGCU-------CCG--GUUGCCGaagCAG- -5'
13975 3' -58.8 NC_003521.1 + 77724 0.66 0.876714
Target:  5'- uGG-CGACGGcGGCCucgGugGGCggCGUCu -3'
miRNA:   3'- uCCgGCUGCU-CCGG---UugCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 78802 0.67 0.824234
Target:  5'- cAGGUCGACGAgcGGCCcuggUGGCgccagUCGUa -3'
miRNA:   3'- -UCCGGCUGCU--CCGGuu--GCCGa----AGCAg -5'
13975 3' -58.8 NC_003521.1 + 81192 0.67 0.840116
Target:  5'- cAGGCCucGGCGAucugGGCCAAa-GCUUUGUUg -3'
miRNA:   3'- -UCCGG--CUGCU----CCGGUUgcCGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 86172 0.67 0.862635
Target:  5'- -uGCCGGCcucGGCCAGCGGCa-CGUg -3'
miRNA:   3'- ucCGGCUGcu-CCGGUUGCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 86197 0.67 0.832258
Target:  5'- cGGGCCacgGugGAGGCgAAgGGCggCGg- -3'
miRNA:   3'- -UCCGG---CugCUCCGgUUgCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 86267 0.66 0.869771
Target:  5'- cGGCCGGCGAGGCgAAguugggggUGGCgcccaacaCGUa -3'
miRNA:   3'- uCCGGCUGCUCCGgUU--------GCCGaa------GCAg -5'
13975 3' -58.8 NC_003521.1 + 86658 0.66 0.869771
Target:  5'- cGGCCGACGAcagguugaGGaUCAGCG-CgUCGUCg -3'
miRNA:   3'- uCCGGCUGCU--------CC-GGUUGCcGaAGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.