miRNA display CGI


Results 81 - 100 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 104681 0.76 0.34713
Target:  5'- cGGaGCuCGAgGGGGCCGugGGCggCGUCg -3'
miRNA:   3'- -UC-CG-GCUgCUCCGGUugCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 104975 0.67 0.847802
Target:  5'- aGGGCUGACGuucccGGuGCuCAugGGCacgggagcgUUCGUCg -3'
miRNA:   3'- -UCCGGCUGC-----UC-CG-GUugCCG---------AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 108913 0.68 0.790624
Target:  5'- uGGCCGACagugcguaGAuGGCCAucaucagugcGCGGCUgucgguggCGUCu -3'
miRNA:   3'- uCCGGCUG--------CU-CCGGU----------UGCCGAa-------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 109361 0.83 0.14414
Target:  5'- gAGGCCGACGAGGCCGagagcGCGGcCUUCa-- -3'
miRNA:   3'- -UCCGGCUGCUCCGGU-----UGCC-GAAGcag -5'
13975 3' -58.8 NC_003521.1 + 111243 0.73 0.497032
Target:  5'- cGGCCGGCGcGGCgCGGCGGagcagccaUCGUCg -3'
miRNA:   3'- uCCGGCUGCuCCG-GUUGCCga------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 111588 0.71 0.611215
Target:  5'- aGGuGCCGcGCGuGGCCAGCGGCgcCGg- -3'
miRNA:   3'- -UC-CGGC-UGCuCCGGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 113392 0.73 0.515512
Target:  5'- uGGCCGACGAGccGCUGGCGGCcuaCGUg -3'
miRNA:   3'- uCCGGCUGCUC--CGGUUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 113769 0.71 0.627789
Target:  5'- cAGGCgcgucgacgaCGGCGAcGGCCAgcgcgacgggcaccGCGGCggcgUCGUCg -3'
miRNA:   3'- -UCCG----------GCUGCU-CCGGU--------------UGCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 115839 0.66 0.883458
Target:  5'- aGGcGCUGGCucAGGCgGGCGGCgcacgccUCGUCa -3'
miRNA:   3'- -UC-CGGCUGc-UCCGgUUGCCGa------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 115923 0.67 0.824234
Target:  5'- cGGUagaGGUGAGGCCAguACGGUUggggCGUCu -3'
miRNA:   3'- uCCGg--CUGCUCCGGU--UGCCGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 117469 0.68 0.790624
Target:  5'- cGGCUGuCgGAGGCCAcggccGCGGCgcuggggcCGUCg -3'
miRNA:   3'- uCCGGCuG-CUCCGGU-----UGCCGaa------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 117493 0.66 0.883458
Target:  5'- cGGGCCuguccGGCGGGGCguACGGCg--GUa -3'
miRNA:   3'- -UCCGG-----CUGCUCCGguUGCCGaagCAg -5'
13975 3' -58.8 NC_003521.1 + 117863 0.66 0.889999
Target:  5'- gAGGaccugaguuuccCCGGCGAGGCCGagcACGGCcgggCG-Cg -3'
miRNA:   3'- -UCC------------GGCUGCUCCGGU---UGCCGaa--GCaG- -5'
13975 3' -58.8 NC_003521.1 + 118921 0.67 0.832258
Target:  5'- cGGCgccgCGGCGuGGgCGGCGGCguccCGUCa -3'
miRNA:   3'- uCCG----GCUGCuCCgGUUGCCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 120811 0.68 0.781878
Target:  5'- aAGGCCGACcuGAucaacuacaGCCAGCGGCgcaUGUCg -3'
miRNA:   3'- -UCCGGCUG--CUc--------CGGUUGCCGaa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 121919 0.67 0.861911
Target:  5'- cGGcGCCGACGAGGgCGAgGaccucauGCU-CGUCa -3'
miRNA:   3'- -UC-CGGCUGCUCCgGUUgC-------CGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 122520 0.69 0.727116
Target:  5'- cGGCgGGC-AGGCCGGCGGCggUGg- -3'
miRNA:   3'- uCCGgCUGcUCCGGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 122652 0.66 0.889999
Target:  5'- -uGCCGGCGGGcGUCGucuGCGGCggugggguggCGUCg -3'
miRNA:   3'- ucCGGCUGCUC-CGGU---UGCCGaa--------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 122700 0.67 0.832258
Target:  5'- uGGGCgucuCGGCGGGGCUggaGGCGGUcgUgGUCg -3'
miRNA:   3'- -UCCG----GCUGCUCCGG---UUGCCGa-AgCAG- -5'
13975 3' -58.8 NC_003521.1 + 123216 0.67 0.85531
Target:  5'- cGGGUagGACGGGGgCGGCGGUaggUgGUCg -3'
miRNA:   3'- -UCCGg-CUGCUCCgGUUGCCGa--AgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.