miRNA display CGI


Results 101 - 120 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 123560 0.7 0.708182
Target:  5'- cGGCCGACGAcGGCgGuggcgggaugGCGGCggCGcCg -3'
miRNA:   3'- uCCGGCUGCU-CCGgU----------UGCCGaaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 123974 0.69 0.717682
Target:  5'- cAGGUCGuCGcGGUCGGCGGC--CGUCa -3'
miRNA:   3'- -UCCGGCuGCuCCGGUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 124598 0.77 0.333307
Target:  5'- uGGCCGACGAGGacgacgaagcggcggCGACGGCgaCGUCu -3'
miRNA:   3'- uCCGGCUGCUCCg--------------GUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 125793 0.69 0.727116
Target:  5'- cGGCCuGCGAGGcCCAGgGGUUgugCGUg -3'
miRNA:   3'- uCCGGcUGCUCC-GGUUgCCGAa--GCAg -5'
13975 3' -58.8 NC_003521.1 + 127411 0.68 0.790624
Target:  5'- uGGUCGugcagcgcguucACGuAGGCCGccaGCGGCU-CGUCg -3'
miRNA:   3'- uCCGGC------------UGC-UCCGGU---UGCCGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 128262 0.67 0.85531
Target:  5'- uAGGCCGugGuGGgCAGCGcGUUgcggauggUGUCg -3'
miRNA:   3'- -UCCGGCugCuCCgGUUGC-CGAa-------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 128386 0.66 0.896334
Target:  5'- aGGGCCGcCuGGGCCGccugaGCGGg--CGUCg -3'
miRNA:   3'- -UCCGGCuGcUCCGGU-----UGCCgaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 130001 0.66 0.889999
Target:  5'- -cGCCGGCGGcggcgcgcaacGGCCGcUGGCUUucagCGUCa -3'
miRNA:   3'- ucCGGCUGCU-----------CCGGUuGCCGAA----GCAG- -5'
13975 3' -58.8 NC_003521.1 + 130289 0.67 0.840116
Target:  5'- cGGCUaccugGGCGAGGCCG-CGGCgccgCG-Ca -3'
miRNA:   3'- uCCGG-----CUGCUCCGGUuGCCGaa--GCaG- -5'
13975 3' -58.8 NC_003521.1 + 135631 0.68 0.778345
Target:  5'- cGGGCgGAUcccacgaucggcggGGGGCCcagcgucGGCGGCgUCGUCa -3'
miRNA:   3'- -UCCGgCUG--------------CUCCGG-------UUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 137245 0.68 0.807718
Target:  5'- --aCCGGcCGGGGCCGACGGCggcagCGg- -3'
miRNA:   3'- uccGGCU-GCUCCGGUUGCCGaa---GCag -5'
13975 3' -58.8 NC_003521.1 + 138319 0.67 0.832258
Target:  5'- uGGCCGACauGGaCCuGCGGCUgcgcgacggCGUCu -3'
miRNA:   3'- uCCGGCUGcuCC-GGuUGCCGAa--------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 139751 0.67 0.862635
Target:  5'- cAGGCCG-CGu-GCCGACGGCaggauccggcCGUCg -3'
miRNA:   3'- -UCCGGCuGCucCGGUUGCCGaa--------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 142751 0.73 0.487904
Target:  5'- aAGGCgaCGACGGGGUgaccagcguccgCGGCGGCgUCGUCg -3'
miRNA:   3'- -UCCG--GCUGCUCCG------------GUUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 145875 0.72 0.572434
Target:  5'- cGGGCggcgccgaCGACGAGGCCGcCGGCggCGg- -3'
miRNA:   3'- -UCCG--------GCUGCUCCGGUuGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 148896 0.68 0.816052
Target:  5'- uGGCCGACgccgagGAGcGCCGccGCGGCaUCGa- -3'
miRNA:   3'- uCCGGCUG------CUC-CGGU--UGCCGaAGCag -5'
13975 3' -58.8 NC_003521.1 + 150707 0.7 0.708182
Target:  5'- -cGCCGGCGGcgacuggcucucGGCCGugGGCcaCGUCc -3'
miRNA:   3'- ucCGGCUGCU------------CCGGUugCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 151815 0.66 0.889999
Target:  5'- uGGcGCCGGUGGGGCCcGCGGCauUUCuGUa -3'
miRNA:   3'- -UC-CGGCUGCUCCGGuUGCCG--AAG-CAg -5'
13975 3' -58.8 NC_003521.1 + 152199 0.67 0.85531
Target:  5'- uGGGCUgugacccgGACGAGGUC-ACGGCgcaCGUg -3'
miRNA:   3'- -UCCGG--------CUGCUCCGGuUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 152288 0.66 0.892558
Target:  5'- --cCCGAgGAGGCCGuuucggugcgccugcACGGCUgcgaGUCg -3'
miRNA:   3'- uccGGCUgCUCCGGU---------------UGCCGAag--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.