miRNA display CGI


Results 121 - 140 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 153112 0.67 0.862635
Target:  5'- cGGGCgCGcGCGAcGGCagcaGGCGGCUUUGg- -3'
miRNA:   3'- -UCCG-GC-UGCU-CCGg---UUGCCGAAGCag -5'
13975 3' -58.8 NC_003521.1 + 153176 0.67 0.829868
Target:  5'- uGGGCUGcgccuccagccuguGCGAGGCCuGCGGCggCa-- -3'
miRNA:   3'- -UCCGGC--------------UGCUCCGGuUGCCGaaGcag -5'
13975 3' -58.8 NC_003521.1 + 153444 0.69 0.727116
Target:  5'- cGGUCGcgcuCGuAGGCCAGCGGCU-CG-Ca -3'
miRNA:   3'- uCCGGCu---GC-UCCGGUUGCCGAaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 153659 0.78 0.285266
Target:  5'- uGGaCGACGAGGCC-AUGaGCUUCGUCu -3'
miRNA:   3'- uCCgGCUGCUCCGGuUGC-CGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 155250 0.67 0.824234
Target:  5'- uGGUgGugGGGGgCGGCGGCggCGg- -3'
miRNA:   3'- uCCGgCugCUCCgGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 155391 0.68 0.781878
Target:  5'- cGGaCGACGAGGCCGGCGGg------ -3'
miRNA:   3'- uCCgGCUGCUCCGGUUGCCgaagcag -5'
13975 3' -58.8 NC_003521.1 + 155501 0.68 0.807718
Target:  5'- cGGGCCG-CG-GGCCAaggcuggagcgACGGCgaCGUg -3'
miRNA:   3'- -UCCGGCuGCuCCGGU-----------UGCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 160325 0.68 0.790624
Target:  5'- cGGaGCCGugGGcGGCgCggUGGCcuccgUCGUCg -3'
miRNA:   3'- -UC-CGGCugCU-CCG-GuuGCCGa----AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 163710 0.67 0.840116
Target:  5'- cGGCC-ACGAGGCCGAaucCUgCGUCg -3'
miRNA:   3'- uCCGGcUGCUCCGGUUgccGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 164677 0.73 0.524856
Target:  5'- uGGUgaaccccgugaCGACGAGGCCGGCGGCUgaCGa- -3'
miRNA:   3'- uCCG-----------GCUGCUCCGGUUGCCGAa-GCag -5'
13975 3' -58.8 NC_003521.1 + 165739 0.66 0.876714
Target:  5'- uGGuuGAUGaAGGCCAccAUGGCgUCGg- -3'
miRNA:   3'- uCCggCUGC-UCCGGU--UGCCGaAGCag -5'
13975 3' -58.8 NC_003521.1 + 166923 0.7 0.689013
Target:  5'- gAGGuaGACGGGGCCcACGGCcUUG-Cg -3'
miRNA:   3'- -UCCggCUGCUCCGGuUGCCGaAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 167331 0.66 0.896334
Target:  5'- cGGGUCGAgGAGGagcuCGGCcUCGUa -3'
miRNA:   3'- -UCCGGCUgCUCCgguuGCCGaAGCAg -5'
13975 3' -58.8 NC_003521.1 + 167751 0.71 0.600511
Target:  5'- uGGCCGGCGgagcugaGGGUCAccgacAUGGCguggUCGUCg -3'
miRNA:   3'- uCCGGCUGC-------UCCGGU-----UGCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 168422 0.71 0.620961
Target:  5'- aGGGCgGGCGgcaGGGCCGcgGCGGCgggCGUg -3'
miRNA:   3'- -UCCGgCUGC---UCCGGU--UGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 168532 0.67 0.847802
Target:  5'- cAGGCUGGC--GGCCAgcGCGGCggCGg- -3'
miRNA:   3'- -UCCGGCUGcuCCGGU--UGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 169007 0.67 0.840116
Target:  5'- cGGgCGACGGGGCCGgcacgaucuugACGuGCgugaCGUCc -3'
miRNA:   3'- uCCgGCUGCUCCGGU-----------UGC-CGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 169312 0.67 0.861911
Target:  5'- cGGCCGGCGucGGUCGcagcgucGCGGCcggCGUg -3'
miRNA:   3'- uCCGGCUGCu-CCGGU-------UGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 169443 0.67 0.832258
Target:  5'- cGGaCGACGGcGUCGGCGGCggcgggUUCGUCg -3'
miRNA:   3'- uCCgGCUGCUcCGGUUGCCG------AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 170295 0.69 0.764029
Target:  5'- cGGCCGGcCGAGcGCgaGGCGGUcaCGUCg -3'
miRNA:   3'- uCCGGCU-GCUC-CGg-UUGCCGaaGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.