miRNA display CGI


Results 101 - 120 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 104975 0.67 0.847802
Target:  5'- aGGGCUGACGuucccGGuGCuCAugGGCacgggagcgUUCGUCg -3'
miRNA:   3'- -UCCGGCUGC-----UC-CG-GUugCCG---------AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 104681 0.76 0.34713
Target:  5'- cGGaGCuCGAgGGGGCCGugGGCggCGUCg -3'
miRNA:   3'- -UC-CG-GCUgCUCCGGUugCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 103832 0.69 0.745754
Target:  5'- uGGCUGuACaGGGGCCGcgucuCGGCcUCGUCc -3'
miRNA:   3'- uCCGGC-UG-CUCCGGUu----GCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 102594 0.67 0.832258
Target:  5'- gGGGCUGGCGcuGGCC-ACGucgUCGUCg -3'
miRNA:   3'- -UCCGGCUGCu-CCGGuUGCcgaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 100225 0.66 0.889999
Target:  5'- uAGGCCGGCGAGGUgGA--GCUgggCGa- -3'
miRNA:   3'- -UCCGGCUGCUCCGgUUgcCGAa--GCag -5'
13975 3' -58.8 NC_003521.1 + 100198 0.67 0.840116
Target:  5'- cAGGCC-ACGAGcGCCAuauuuACGGCcUCcUCg -3'
miRNA:   3'- -UCCGGcUGCUC-CGGU-----UGCCGaAGcAG- -5'
13975 3' -58.8 NC_003521.1 + 100131 0.67 0.854568
Target:  5'- cGGCUGGCGguccugcgggaAGGCCGugGgGCUcuugaggUCGUUg -3'
miRNA:   3'- uCCGGCUGC-----------UCCGGUugC-CGA-------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 98612 0.66 0.87396
Target:  5'- gAGGCCauGGCGAGGagggcgagagcggCGGCGGCgguagcggCGUCg -3'
miRNA:   3'- -UCCGG--CUGCUCCg------------GUUGCCGaa------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 98478 0.67 0.840116
Target:  5'- cGGCCG-CGGcGGCCGugGCGGCggccUCG-Cg -3'
miRNA:   3'- uCCGGCuGCU-CCGGU--UGCCGa---AGCaG- -5'
13975 3' -58.8 NC_003521.1 + 95561 0.67 0.824234
Target:  5'- uGGCCGcCGAGGCCGAggaGGCg----- -3'
miRNA:   3'- uCCGGCuGCUCCGGUUg--CCGaagcag -5'
13975 3' -58.8 NC_003521.1 + 95217 0.66 0.876714
Target:  5'- cGGGUgCGacugcagcaGCGAGGCC-ACGGCcgccgCGUCg -3'
miRNA:   3'- -UCCG-GC---------UGCUCCGGuUGCCGaa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 94912 0.69 0.73087
Target:  5'- aAGGCCGuuuGCGAaccgccgcugcucccGccGCCGGCGGCcUCGUCg -3'
miRNA:   3'- -UCCGGC---UGCU---------------C--CGGUUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 93073 0.67 0.840116
Target:  5'- uGGCC-AUG-GGCCugugcuACGGCUUCGg- -3'
miRNA:   3'- uCCGGcUGCuCCGGu-----UGCCGAAGCag -5'
13975 3' -58.8 NC_003521.1 + 92235 0.68 0.781878
Target:  5'- aGGGcCCGACGGGcGCCGcGCGGuCUUuuggccggucgCGUCg -3'
miRNA:   3'- -UCC-GGCUGCUC-CGGU-UGCC-GAA-----------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 92007 0.72 0.553251
Target:  5'- cGGGagCGGCGAGGCgCGGCGGCggCGg- -3'
miRNA:   3'- -UCCg-GCUGCUCCG-GUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 91671 0.68 0.77301
Target:  5'- cGGaCGACGAGGUgGccACGGCgUCGUg -3'
miRNA:   3'- uCCgGCUGCUCCGgU--UGCCGaAGCAg -5'
13975 3' -58.8 NC_003521.1 + 90490 0.69 0.75494
Target:  5'- cGGCCGAgaCGGGGCCGuguccCGaGCgucCGUCg -3'
miRNA:   3'- uCCGGCU--GCUCCGGUu----GC-CGaa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 90096 0.66 0.883458
Target:  5'- cGGCCcagGACGuGGCCcACGGCcgagagccaGUCg -3'
miRNA:   3'- uCCGG---CUGCuCCGGuUGCCGaag------CAG- -5'
13975 3' -58.8 NC_003521.1 + 89821 0.67 0.85531
Target:  5'- -cGCCG-UGucGGCCGACGGCguUUCGUUc -3'
miRNA:   3'- ucCGGCuGCu-CCGGUUGCCG--AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 88661 0.67 0.840116
Target:  5'- aGGGCCGccagguCGguGGGCCGGCGGCccggcUCGg- -3'
miRNA:   3'- -UCCGGCu-----GC--UCCGGUUGCCGa----AGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.