miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 142751 0.73 0.487904
Target:  5'- aAGGCgaCGACGGGGUgaccagcguccgCGGCGGCgUCGUCg -3'
miRNA:   3'- -UCCG--GCUGCUCCG------------GUUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 201205 0.74 0.46013
Target:  5'- gAGGCCGGCGgucugcucccgcuGGGCCGgccguACGGCUUCu-- -3'
miRNA:   3'- -UCCGGCUGC-------------UCCGGU-----UGCCGAAGcag -5'
13975 3' -58.8 NC_003521.1 + 200314 0.74 0.458367
Target:  5'- cGGGCCGGcCGgucggacguguuucGGGCCGGCGGg-UCGUCg -3'
miRNA:   3'- -UCCGGCU-GC--------------UCCGGUUGCCgaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 234781 0.74 0.443527
Target:  5'- gGGGCCGcUGGGGC--ACGGCUuacUCGUCg -3'
miRNA:   3'- -UCCGGCuGCUCCGguUGCCGA---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 197334 0.75 0.401513
Target:  5'- cAGGCCcugGGCGAGGUCAuCGGCUccuUCGUg -3'
miRNA:   3'- -UCCGG---CUGCUCCGGUuGCCGA---AGCAg -5'
13975 3' -58.8 NC_003521.1 + 145875 0.72 0.572434
Target:  5'- cGGGCggcgccgaCGACGAGGCCGcCGGCggCGg- -3'
miRNA:   3'- -UCCG--------GCUGCUCCGGUuGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 218619 0.71 0.60732
Target:  5'- cGGCCGccagcgcGCGGcgguaagcggccacGGCCGGCGGCgccUCGUCc -3'
miRNA:   3'- uCCGGC-------UGCU--------------CCGGUUGCCGa--AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 103832 0.69 0.745754
Target:  5'- uGGCUGuACaGGGGCCGcgucuCGGCcUCGUCc -3'
miRNA:   3'- uCCGGC-UG-CUCCGGUu----GCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 125793 0.69 0.727116
Target:  5'- cGGCCuGCGAGGcCCAGgGGUUgugCGUg -3'
miRNA:   3'- uCCGGcUGCUCC-GGUUgCCGAa--GCAg -5'
13975 3' -58.8 NC_003521.1 + 153444 0.69 0.727116
Target:  5'- cGGUCGcgcuCGuAGGCCAGCGGCU-CG-Ca -3'
miRNA:   3'- uCCGGCu---GC-UCCGGUUGCCGAaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 35972 0.69 0.727116
Target:  5'- uGGgCGACGAGGaCGACgaaccgGGCUUgGUCa -3'
miRNA:   3'- uCCgGCUGCUCCgGUUG------CCGAAgCAG- -5'
13975 3' -58.8 NC_003521.1 + 32296 0.69 0.726176
Target:  5'- cGGCCGAauGGGCCAgacagcuGCGGCgcaCGUa -3'
miRNA:   3'- uCCGGCUgcUCCGGU-------UGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 150707 0.7 0.708182
Target:  5'- -cGCCGGCGGcgacuggcucucGGCCGugGGCcaCGUCc -3'
miRNA:   3'- ucCGGCUGCU------------CCGGUugCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 181312 0.7 0.698622
Target:  5'- cAGGCCGcccGCG-GGCCAG-GGCgcCGUCu -3'
miRNA:   3'- -UCCGGC---UGCuCCGGUUgCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 46447 0.7 0.698622
Target:  5'- gGGGCUG-CgGGGGCUGGuCGGCcUCGUCg -3'
miRNA:   3'- -UCCGGCuG-CUCCGGUU-GCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 39445 0.7 0.67936
Target:  5'- cGGCCGAgccCGGcGCCGAgGGCcgCGUCg -3'
miRNA:   3'- uCCGGCU---GCUcCGGUUgCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 59094 0.7 0.669671
Target:  5'- cGGCCG-CuuGGCCAGCGuGCgcgCGUCc -3'
miRNA:   3'- uCCGGCuGcuCCGGUUGC-CGaa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 38312 0.7 0.659956
Target:  5'- cAGGCCGAgGcacGGCCAAgGGCgauggCGUUu -3'
miRNA:   3'- -UCCGGCUgCu--CCGGUUgCCGaa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 72983 0.71 0.64047
Target:  5'- -aGCCGACGA-GCCcGCGGCggUCGUg -3'
miRNA:   3'- ucCGGCUGCUcCGGuUGCCGa-AGCAg -5'
13975 3' -58.8 NC_003521.1 + 168422 0.71 0.620961
Target:  5'- aGGGCgGGCGgcaGGGCCGcgGCGGCgggCGUg -3'
miRNA:   3'- -UCCGgCUGC---UCCGGU--UGCCGaa-GCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.