miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 59094 0.7 0.669671
Target:  5'- cGGCCG-CuuGGCCAGCGuGCgcgCGUCc -3'
miRNA:   3'- uCCGGCuGcuCCGGUUGC-CGaa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 39445 0.7 0.67936
Target:  5'- cGGCCGAgccCGGcGCCGAgGGCcgCGUCg -3'
miRNA:   3'- uCCGGCU---GCUcCGGUUgCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 73128 0.68 0.77301
Target:  5'- gAGGUgcugcaCGGCGGGGgCAGCGGCggCGg- -3'
miRNA:   3'- -UCCG------GCUGCUCCgGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 74571 0.68 0.781878
Target:  5'- gAGGgCGGCGAcGGagCGGCGGCgcggCGUCc -3'
miRNA:   3'- -UCCgGCUGCU-CCg-GUUGCCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 127411 0.68 0.790624
Target:  5'- uGGUCGugcagcgcguucACGuAGGCCGccaGCGGCU-CGUCg -3'
miRNA:   3'- uCCGGC------------UGC-UCCGGU---UGCCGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 108913 0.68 0.790624
Target:  5'- uGGCCGACagugcguaGAuGGCCAucaucagugcGCGGCUgucgguggCGUCu -3'
miRNA:   3'- uCCGGCUG--------CU-CCGGU----------UGCCGAa-------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 54531 0.68 0.79924
Target:  5'- cGGcGCCGcUGGGGcCCGGCGGCUUuuugaCGUUg -3'
miRNA:   3'- -UC-CGGCuGCUCC-GGUUGCCGAA-----GCAG- -5'
13975 3' -58.8 NC_003521.1 + 239269 0.68 0.79924
Target:  5'- cGGGUguggCGcCGAGGCgAACGGCU-CGUa -3'
miRNA:   3'- -UCCG----GCuGCUCCGgUUGCCGAaGCAg -5'
13975 3' -58.8 NC_003521.1 + 42193 0.68 0.806877
Target:  5'- -aGCaCGGCGuuucccuGGGCCAGCGGCU--GUCg -3'
miRNA:   3'- ucCG-GCUGC-------UCCGGUUGCCGAagCAG- -5'
13975 3' -58.8 NC_003521.1 + 137245 0.68 0.807718
Target:  5'- --aCCGGcCGGGGCCGACGGCggcagCGg- -3'
miRNA:   3'- uccGGCU-GCUCCGGUUGCCGaa---GCag -5'
13975 3' -58.8 NC_003521.1 + 16688 0.69 0.764029
Target:  5'- uGGcCCGACucGGCCcACGGCcuggacaUCGUCg -3'
miRNA:   3'- uCC-GGCUGcuCCGGuUGCCGa------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 23012 0.69 0.75494
Target:  5'- cGGCaucCGAgGAGGCCAAUGGgacgcauauCUUCGUg -3'
miRNA:   3'- uCCG---GCUgCUCCGGUUGCC---------GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 46447 0.7 0.698622
Target:  5'- gGGGCUG-CgGGGGCUGGuCGGCcUCGUCg -3'
miRNA:   3'- -UCCGGCuG-CUCCGGUU-GCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 181312 0.7 0.698622
Target:  5'- cAGGCCGcccGCG-GGCCAG-GGCgcCGUCu -3'
miRNA:   3'- -UCCGGC---UGCuCCGGUUgCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 150707 0.7 0.708182
Target:  5'- -cGCCGGCGGcgacuggcucucGGCCGugGGCcaCGUCc -3'
miRNA:   3'- ucCGGCUGCU------------CCGGUugCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 32296 0.69 0.726176
Target:  5'- cGGCCGAauGGGCCAgacagcuGCGGCgcaCGUa -3'
miRNA:   3'- uCCGGCUgcUCCGGU-------UGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 35972 0.69 0.727116
Target:  5'- uGGgCGACGAGGaCGACgaaccgGGCUUgGUCa -3'
miRNA:   3'- uCCgGCUGCUCCgGUUG------CCGAAgCAG- -5'
13975 3' -58.8 NC_003521.1 + 153444 0.69 0.727116
Target:  5'- cGGUCGcgcuCGuAGGCCAGCGGCU-CG-Ca -3'
miRNA:   3'- uCCGGCu---GC-UCCGGUUGCCGAaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 125793 0.69 0.727116
Target:  5'- cGGCCuGCGAGGcCCAGgGGUUgugCGUg -3'
miRNA:   3'- uCCGGcUGCUCC-GGUUgCCGAa--GCAg -5'
13975 3' -58.8 NC_003521.1 + 103832 0.69 0.745754
Target:  5'- uGGCUGuACaGGGGCCGcgucuCGGCcUCGUCc -3'
miRNA:   3'- uCCGGC-UG-CUCCGGUu----GCCGaAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.