miRNA display CGI


Results 121 - 140 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 172115 0.75 0.418016
Target:  5'- cGGCCGACGGcGCC-ACGGUcaugagUUCGUCg -3'
miRNA:   3'- uCCGGCUGCUcCGGuUGCCG------AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 36360 0.75 0.418016
Target:  5'- cGGGCUGGCGuGGC--GCGGCUUCG-Cg -3'
miRNA:   3'- -UCCGGCUGCuCCGguUGCCGAAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 124598 0.77 0.333307
Target:  5'- uGGCCGACGAGGacgacgaagcggcggCGACGGCgaCGUCu -3'
miRNA:   3'- uCCGGCUGCUCCg--------------GUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 153659 0.78 0.285266
Target:  5'- uGGaCGACGAGGCC-AUGaGCUUCGUCu -3'
miRNA:   3'- uCCgGCUGCUCCGGuUGC-CGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 177784 0.81 0.192626
Target:  5'- aGGGCCGACGGGGCCuguccgcugGugGGCgUCGUg -3'
miRNA:   3'- -UCCGGCUGCUCCGG---------UugCCGaAGCAg -5'
13975 3' -58.8 NC_003521.1 + 109361 0.83 0.14414
Target:  5'- gAGGCCGACGAGGCCGagagcGCGGcCUUCa-- -3'
miRNA:   3'- -UCCGGCUGCUCCGGU-----UGCC-GAAGcag -5'
13975 3' -58.8 NC_003521.1 + 111243 0.73 0.497032
Target:  5'- cGGCCGGCGcGGCgCGGCGGagcagccaUCGUCg -3'
miRNA:   3'- uCCGGCUGCuCCG-GUUGCCga------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 181761 0.73 0.506236
Target:  5'- cGGCCGACGAGGaCAACGaGCUggagacggCGcUCa -3'
miRNA:   3'- uCCGGCUGCUCCgGUUGC-CGAa-------GC-AG- -5'
13975 3' -58.8 NC_003521.1 + 113392 0.73 0.515512
Target:  5'- uGGCCGACGAGccGCUGGCGGCcuaCGUg -3'
miRNA:   3'- uCCGGCUGCUC--CGGUUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 23544 0.7 0.708182
Target:  5'- cGGUgGugGuGGCCAGCGccuGCUccUCGUCc -3'
miRNA:   3'- uCCGgCugCuCCGGUUGC---CGA--AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 87768 0.7 0.698622
Target:  5'- cGGCgGAgGAGGCCuGGgGGCcgccUCGUCg -3'
miRNA:   3'- uCCGgCUgCUCCGG-UUgCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 182370 0.7 0.698622
Target:  5'- uGGUCGACGuGGUgcgcggaaaguuCGcccggcagcgcuGCGGCUUCGUCa -3'
miRNA:   3'- uCCGGCUGCuCCG------------GU------------UGCCGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 166923 0.7 0.689013
Target:  5'- gAGGuaGACGGGGCCcACGGCcUUG-Cg -3'
miRNA:   3'- -UCCggCUGCUCCGGuUGCCGaAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 183688 0.71 0.65022
Target:  5'- uGGCCGACGAGaCCuAUcGCUUCGUg -3'
miRNA:   3'- uCCGGCUGCUCcGGuUGcCGAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 113769 0.71 0.627789
Target:  5'- cAGGCgcgucgacgaCGGCGAcGGCCAgcgcgacgggcaccGCGGCggcgUCGUCg -3'
miRNA:   3'- -UCCG----------GCUGCU-CCGGU--------------UGCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 111588 0.71 0.611215
Target:  5'- aGGuGCCGcGCGuGGCCAGCGGCgcCGg- -3'
miRNA:   3'- -UC-CGGC-UGCuCCGGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 16420 0.71 0.611215
Target:  5'- uGGCCGGCGAGGUguAcCGGCUggcCGa- -3'
miRNA:   3'- uCCGGCUGCUCCGguU-GCCGAa--GCag -5'
13975 3' -58.8 NC_003521.1 + 167751 0.71 0.600511
Target:  5'- uGGCCGGCGgagcugaGGGUCAccgacAUGGCguggUCGUCg -3'
miRNA:   3'- uCCGGCUGC-------UCCGGU-----UGCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 223936 0.72 0.591771
Target:  5'- cGGCCGAgGGGGUCGagGCGGCcgCGg- -3'
miRNA:   3'- uCCGGCUgCUCCGGU--UGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 196065 0.73 0.534263
Target:  5'- aAGGCCGGCGAGGUgGACuGGCg-CGa- -3'
miRNA:   3'- -UCCGGCUGCUCCGgUUG-CCGaaGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.