miRNA display CGI


Results 141 - 160 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 109361 0.83 0.14414
Target:  5'- gAGGCCGACGAGGCCGagagcGCGGcCUUCa-- -3'
miRNA:   3'- -UCCGGCUGCUCCGGU-----UGCC-GAAGcag -5'
13975 3' -58.8 NC_003521.1 + 167751 0.71 0.600511
Target:  5'- uGGCCGGCGgagcugaGGGUCAccgacAUGGCguggUCGUCg -3'
miRNA:   3'- uCCGGCUGC-------UCCGGU-----UGCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 16420 0.71 0.611215
Target:  5'- uGGCCGGCGAGGUguAcCGGCUggcCGa- -3'
miRNA:   3'- uCCGGCUGCUCCGguU-GCCGAa--GCag -5'
13975 3' -58.8 NC_003521.1 + 111588 0.71 0.611215
Target:  5'- aGGuGCCGcGCGuGGCCAGCGGCgcCGg- -3'
miRNA:   3'- -UC-CGGC-UGCuCCGGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 14751 0.69 0.75494
Target:  5'- cGGGCCGGcCGcGGCCGggGCGcGcCUUCGUg -3'
miRNA:   3'- -UCCGGCU-GCuCCGGU--UGC-C-GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 16289 0.69 0.736476
Target:  5'- gGGcGCCGugGGugccuaccGGcCCGGCGGCUUCuUCg -3'
miRNA:   3'- -UC-CGGCugCU--------CC-GGUUGCCGAAGcAG- -5'
13975 3' -58.8 NC_003521.1 + 94912 0.69 0.73087
Target:  5'- aAGGCCGuuuGCGAaccgccgcugcucccGccGCCGGCGGCcUCGUCg -3'
miRNA:   3'- -UCCGGC---UGCU---------------C--CGGUUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 176080 0.69 0.727116
Target:  5'- cGGCCGGCGucuuGGCC-ACGGCgUCc-- -3'
miRNA:   3'- uCCGGCUGCu---CCGGuUGCCGaAGcag -5'
13975 3' -58.8 NC_003521.1 + 122520 0.69 0.727116
Target:  5'- cGGCgGGC-AGGCCGGCGGCggUGg- -3'
miRNA:   3'- uCCGgCUGcUCCGGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 197001 0.69 0.717682
Target:  5'- cGGCCGGCGGcGGCUGAccCGGCUgcugCGa- -3'
miRNA:   3'- uCCGGCUGCU-CCGGUU--GCCGAa---GCag -5'
13975 3' -58.8 NC_003521.1 + 123974 0.69 0.717682
Target:  5'- cAGGUCGuCGcGGUCGGCGGC--CGUCa -3'
miRNA:   3'- -UCCGGCuGCuCCGGUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 48705 0.7 0.711989
Target:  5'- cGGaGCCGACGAGGCCGGgagagguggagacgcCGGCgaCGc- -3'
miRNA:   3'- -UC-CGGCUGCUCCGGUU---------------GCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 123560 0.7 0.708182
Target:  5'- cGGCCGACGAcGGCgGuggcgggaugGCGGCggCGcCg -3'
miRNA:   3'- uCCGGCUGCU-CCGgU----------UGCCGaaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 13998 0.7 0.708182
Target:  5'- cGGCgGGCGAGGaccCCAugGcGCUguacCGUCa -3'
miRNA:   3'- uCCGgCUGCUCC---GGUugC-CGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 23544 0.7 0.708182
Target:  5'- cGGUgGugGuGGCCAGCGccuGCUccUCGUCc -3'
miRNA:   3'- uCCGgCugCuCCGGUUGC---CGA--AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 87768 0.7 0.698622
Target:  5'- cGGCgGAgGAGGCCuGGgGGCcgccUCGUCg -3'
miRNA:   3'- uCCGgCUgCUCCGG-UUgCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 182370 0.7 0.698622
Target:  5'- uGGUCGACGuGGUgcgcggaaaguuCGcccggcagcgcuGCGGCUUCGUCa -3'
miRNA:   3'- uCCGGCUGCuCCG------------GU------------UGCCGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 166923 0.7 0.689013
Target:  5'- gAGGuaGACGGGGCCcACGGCcUUG-Cg -3'
miRNA:   3'- -UCCggCUGCUCCGGuUGCCGaAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 183688 0.71 0.65022
Target:  5'- uGGCCGACGAGaCCuAUcGCUUCGUg -3'
miRNA:   3'- uCCGGCUGCUCcGGuUGcCGAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 113769 0.71 0.627789
Target:  5'- cAGGCgcgucgacgaCGGCGAcGGCCAgcgcgacgggcaccGCGGCggcgUCGUCg -3'
miRNA:   3'- -UCCG----------GCUGCU-CCGGU--------------UGCCGa---AGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.