miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 94912 0.69 0.73087
Target:  5'- aAGGCCGuuuGCGAaccgccgcugcucccGccGCCGGCGGCcUCGUCg -3'
miRNA:   3'- -UCCGGC---UGCU---------------C--CGGUUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 167751 0.71 0.600511
Target:  5'- uGGCCGGCGgagcugaGGGUCAccgacAUGGCguggUCGUCg -3'
miRNA:   3'- uCCGGCUGC-------UCCGGU-----UGCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 177784 0.81 0.192626
Target:  5'- aGGGCCGACGGGGCCuguccgcugGugGGCgUCGUg -3'
miRNA:   3'- -UCCGGCUGCUCCGG---------UugCCGaAGCAg -5'
13975 3' -58.8 NC_003521.1 + 176080 0.69 0.727116
Target:  5'- cGGCCGGCGucuuGGCC-ACGGCgUCc-- -3'
miRNA:   3'- uCCGGCUGCu---CCGGuUGCCGaAGcag -5'
13975 3' -58.8 NC_003521.1 + 109361 0.83 0.14414
Target:  5'- gAGGCCGACGAGGCCGagagcGCGGcCUUCa-- -3'
miRNA:   3'- -UCCGGCUGCUCCGGU-----UGCC-GAAGcag -5'
13975 3' -58.8 NC_003521.1 + 155250 0.67 0.824234
Target:  5'- uGGUgGugGGGGgCGGCGGCggCGg- -3'
miRNA:   3'- uCCGgCugCUCCgGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 124598 0.77 0.333307
Target:  5'- uGGCCGACGAGGacgacgaagcggcggCGACGGCgaCGUCu -3'
miRNA:   3'- uCCGGCUGCUCCg--------------GUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 31558 0.68 0.813568
Target:  5'- gAGGCCGAauggcgcgucCGGGGCUcguucuuccccgaaGACGGCUuacUCGg- -3'
miRNA:   3'- -UCCGGCU----------GCUCCGG--------------UUGCCGA---AGCag -5'
13975 3' -58.8 NC_003521.1 + 18783 0.68 0.807718
Target:  5'- cAGGCgGugGAgGGCCAGCGcuGCUuucgCGUg -3'
miRNA:   3'- -UCCGgCugCU-CCGGUUGC--CGAa---GCAg -5'
13975 3' -58.8 NC_003521.1 + 172393 0.68 0.781878
Target:  5'- cGGuuGAgGGGcGCCGGCGGagcCGUCg -3'
miRNA:   3'- uCCggCUgCUC-CGGUUGCCgaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 210424 0.68 0.781878
Target:  5'- uGGUCGGCGuGGGCggCGACGGCagCGUa -3'
miRNA:   3'- uCCGGCUGC-UCCG--GUUGCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 170295 0.69 0.764029
Target:  5'- cGGCCGGcCGAGcGCgaGGCGGUcaCGUCg -3'
miRNA:   3'- uCCGGCU-GCUC-CGg-UUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 14751 0.69 0.75494
Target:  5'- cGGGCCGGcCGcGGCCGggGCGcGcCUUCGUg -3'
miRNA:   3'- -UCCGGCU-GCuCCGGU--UGC-C-GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 123974 0.69 0.717682
Target:  5'- cAGGUCGuCGcGGUCGGCGGC--CGUCa -3'
miRNA:   3'- -UCCGGCuGCuCCGGUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 13998 0.7 0.708182
Target:  5'- cGGCgGGCGAGGaccCCAugGcGCUguacCGUCa -3'
miRNA:   3'- uCCGgCUGCUCC---GGUugC-CGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 166923 0.7 0.689013
Target:  5'- gAGGuaGACGGGGCCcACGGCcUUG-Cg -3'
miRNA:   3'- -UCCggCUGCUCCGGuUGCCGaAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 111588 0.71 0.611215
Target:  5'- aGGuGCCGcGCGuGGCCAGCGGCgcCGg- -3'
miRNA:   3'- -UC-CGGC-UGCuCCGGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 113392 0.73 0.515512
Target:  5'- uGGCCGACGAGccGCUGGCGGCcuaCGUg -3'
miRNA:   3'- uCCGGCUGCUC--CGGUUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 54451 0.74 0.478856
Target:  5'- uGGGCCGACGGGGC-GAUGGUUaUCGa- -3'
miRNA:   3'- -UCCGGCUGCUCCGgUUGCCGA-AGCag -5'
13975 3' -58.8 NC_003521.1 + 978 0.74 0.452224
Target:  5'- gAGGCCGGCGgucugcucccguGGGCCGgccguACGGCUUCu-- -3'
miRNA:   3'- -UCCGGCUGC------------UCCGGU-----UGCCGAAGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.