miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 14751 0.69 0.75494
Target:  5'- cGGGCCGGcCGcGGCCGggGCGcGcCUUCGUg -3'
miRNA:   3'- -UCCGGCU-GCuCCGGU--UGC-C-GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 135631 0.68 0.778345
Target:  5'- cGGGCgGAUcccacgaucggcggGGGGCCcagcgucGGCGGCgUCGUCa -3'
miRNA:   3'- -UCCGgCUG--------------CUCCGG-------UUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 36360 0.75 0.418016
Target:  5'- cGGGCUGGCGuGGC--GCGGCUUCG-Cg -3'
miRNA:   3'- -UCCGGCUGCuCCGguUGCCGAAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 237169 0.74 0.452224
Target:  5'- cGGCCGcCGAGGCaGACGGCggCGg- -3'
miRNA:   3'- uCCGGCuGCUCCGgUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 111243 0.73 0.497032
Target:  5'- cGGCCGGCGcGGCgCGGCGGagcagccaUCGUCg -3'
miRNA:   3'- uCCGGCUGCuCCG-GUUGCCga------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 196065 0.73 0.534263
Target:  5'- aAGGCCGGCGAGGUgGACuGGCg-CGa- -3'
miRNA:   3'- -UCCGGCUGCUCCGgUUG-CCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 113769 0.71 0.627789
Target:  5'- cAGGCgcgucgacgaCGGCGAcGGCCAgcgcgacgggcaccGCGGCggcgUCGUCg -3'
miRNA:   3'- -UCCG----------GCUGCU-CCGGU--------------UGCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 182370 0.7 0.698622
Target:  5'- uGGUCGACGuGGUgcgcggaaaguuCGcccggcagcgcuGCGGCUUCGUCa -3'
miRNA:   3'- uCCGGCUGCuCCG------------GU------------UGCCGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 123560 0.7 0.708182
Target:  5'- cGGCCGACGAcGGCgGuggcgggaugGCGGCggCGcCg -3'
miRNA:   3'- uCCGGCUGCU-CCGgU----------UGCCGaaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 197001 0.69 0.717682
Target:  5'- cGGCCGGCGGcGGCUGAccCGGCUgcugCGa- -3'
miRNA:   3'- uCCGGCUGCU-CCGGUU--GCCGAa---GCag -5'
13975 3' -58.8 NC_003521.1 + 185617 0.67 0.862635
Target:  5'- -cGCCGACGGaGCCGGCGGaCUgccaUCGcCg -3'
miRNA:   3'- ucCGGCUGCUcCGGUUGCC-GA----AGCaG- -5'
13975 3' -58.8 NC_003521.1 + 86172 0.67 0.862635
Target:  5'- -uGCCGGCcucGGCCAGCGGCa-CGUg -3'
miRNA:   3'- ucCGGCUGcu-CCGGUUGCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 155391 0.68 0.781878
Target:  5'- cGGaCGACGAGGCCGGCGGg------ -3'
miRNA:   3'- uCCgGCUGCUCCGGUUGCCgaagcag -5'
13975 3' -58.8 NC_003521.1 + 160325 0.68 0.790624
Target:  5'- cGGaGCCGugGGcGGCgCggUGGCcuccgUCGUCg -3'
miRNA:   3'- -UC-CGGCugCU-CCG-GuuGCCGa----AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 31558 0.68 0.813568
Target:  5'- gAGGCCGAauggcgcgucCGGGGCUcguucuuccccgaaGACGGCUuacUCGg- -3'
miRNA:   3'- -UCCGGCU----------GCUCCGG--------------UUGCCGA---AGCag -5'
13975 3' -58.8 NC_003521.1 + 155250 0.67 0.824234
Target:  5'- uGGUgGugGGGGgCGGCGGCggCGg- -3'
miRNA:   3'- uCCGgCugCUCCgGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 138319 0.67 0.832258
Target:  5'- uGGCCGACauGGaCCuGCGGCUgcgcgacggCGUCu -3'
miRNA:   3'- uCCGGCUGcuCC-GGuUGCCGAa--------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 98478 0.67 0.840116
Target:  5'- cGGCCG-CGGcGGCCGugGCGGCggccUCG-Cg -3'
miRNA:   3'- uCCGGCuGCU-CCGGU--UGCCGa---AGCaG- -5'
13975 3' -58.8 NC_003521.1 + 152199 0.67 0.85531
Target:  5'- uGGGCUgugacccgGACGAGGUC-ACGGCgcaCGUg -3'
miRNA:   3'- -UCCGG--------CUGCUCCGGuUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 224124 0.67 0.85531
Target:  5'- -cGUCGACGAuguccaGGCCGugGGCcgaGUCg -3'
miRNA:   3'- ucCGGCUGCU------CCGGUugCCGaagCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.