miRNA display CGI


Results 81 - 100 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 169443 0.67 0.832258
Target:  5'- cGGaCGACGGcGUCGGCGGCggcgggUUCGUCg -3'
miRNA:   3'- uCCgGCUGCUcCGGUUGCCG------AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 15244 0.67 0.847041
Target:  5'- gAGGCCGcCGAGcGCCAggacgacACGGgUcccCGUCu -3'
miRNA:   3'- -UCCGGCuGCUC-CGGU-------UGCCgAa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 13433 0.67 0.847802
Target:  5'- cGGUCGcCGAGGaCGACGGa--CGUCa -3'
miRNA:   3'- uCCGGCuGCUCCgGUUGCCgaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 152199 0.67 0.85531
Target:  5'- uGGGCUgugacccgGACGAGGUC-ACGGCgcaCGUg -3'
miRNA:   3'- -UCCGG--------CUGCUCCGGuUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 68504 0.67 0.85531
Target:  5'- cGGCCGAgGccuGcGCCAGCGGCgUCa-- -3'
miRNA:   3'- uCCGGCUgCu--C-CGGUUGCCGaAGcag -5'
13975 3' -58.8 NC_003521.1 + 121919 0.67 0.861911
Target:  5'- cGGcGCCGACGAGGgCGAgGaccucauGCU-CGUCa -3'
miRNA:   3'- -UC-CGGCUGCUCCgGUUgC-------CGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 210424 0.68 0.781878
Target:  5'- uGGUCGGCGuGGGCggCGACGGCagCGUa -3'
miRNA:   3'- uCCGGCUGC-UCCG--GUUGCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 182370 0.7 0.698622
Target:  5'- uGGUCGACGuGGUgcgcggaaaguuCGcccggcagcgcuGCGGCUUCGUCa -3'
miRNA:   3'- uCCGGCUGCuCCG------------GU------------UGCCGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 170295 0.69 0.764029
Target:  5'- cGGCCGGcCGAGcGCgaGGCGGUcaCGUCg -3'
miRNA:   3'- uCCGGCU-GCUC-CGg-UUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 38240 0.66 0.889999
Target:  5'- cGGCgGGCGGGGCgGagacGCGGCccaggGUCa -3'
miRNA:   3'- uCCGgCUGCUCCGgU----UGCCGaag--CAG- -5'
13975 3' -58.8 NC_003521.1 + 122652 0.66 0.889999
Target:  5'- -uGCCGGCGGGcGUCGucuGCGGCggugggguggCGUCg -3'
miRNA:   3'- ucCGGCUGCUC-CGGU---UGCCGaa--------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 14751 0.69 0.75494
Target:  5'- cGGGCCGGcCGcGGCCGggGCGcGcCUUCGUg -3'
miRNA:   3'- -UCCGGCU-GCuCCGGU--UGC-C-GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 197001 0.69 0.717682
Target:  5'- cGGCCGGCGGcGGCUGAccCGGCUgcugCGa- -3'
miRNA:   3'- uCCGGCUGCU-CCGGUU--GCCGAa---GCag -5'
13975 3' -58.8 NC_003521.1 + 123560 0.7 0.708182
Target:  5'- cGGCCGACGAcGGCgGuggcgggaugGCGGCggCGcCg -3'
miRNA:   3'- uCCGGCUGCU-CCGgU----------UGCCGaaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 184369 0.66 0.896334
Target:  5'- uGGCgCGGCGccucucggaccuGGGCCAcgagGCGGcCUUCGa- -3'
miRNA:   3'- uCCG-GCUGC------------UCCGGU----UGCC-GAAGCag -5'
13975 3' -58.8 NC_003521.1 + 113769 0.71 0.627789
Target:  5'- cAGGCgcgucgacgaCGGCGAcGGCCAgcgcgacgggcaccGCGGCggcgUCGUCg -3'
miRNA:   3'- -UCCG----------GCUGCU-CCGGU--------------UGCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 16688 0.69 0.764029
Target:  5'- uGGcCCGACucGGCCcACGGCcuggacaUCGUCg -3'
miRNA:   3'- uCC-GGCUGcuCCGGuUGCCGa------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 17752 0.67 0.862635
Target:  5'- gAGGCCGGgGAacuGGCCGuaccgccgGCGGCggacgGUCa -3'
miRNA:   3'- -UCCGGCUgCU---CCGGU--------UGCCGaag--CAG- -5'
13975 3' -58.8 NC_003521.1 + 45307 0.67 0.85531
Target:  5'- aGGaGCCGGagccCGAgcuGGCCGACGGCUaCGa- -3'
miRNA:   3'- -UC-CGGCU----GCU---CCGGUUGCCGAaGCag -5'
13975 3' -58.8 NC_003521.1 + 88063 0.67 0.85531
Target:  5'- gAGGUCG-CGGuGGUCGGCGGCgccCGUg -3'
miRNA:   3'- -UCCGGCuGCU-CCGGUUGCCGaa-GCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.