miRNA display CGI


Results 101 - 120 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 69860 0.67 0.840116
Target:  5'- -cGCCGAUGAGGCCGcCGcGCagCGcCa -3'
miRNA:   3'- ucCGGCUGCUCCGGUuGC-CGaaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 34991 0.73 0.497032
Target:  5'- aAGGUCucCGGGGCCAGCGaGCgcuugCGUCg -3'
miRNA:   3'- -UCCGGcuGCUCCGGUUGC-CGaa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 17752 0.67 0.862635
Target:  5'- gAGGCCGGgGAacuGGCCGuaccgccgGCGGCggacgGUCa -3'
miRNA:   3'- -UCCGGCUgCU---CCGGU--------UGCCGaag--CAG- -5'
13975 3' -58.8 NC_003521.1 + 89821 0.67 0.85531
Target:  5'- -cGCCG-UGucGGCCGACGGCguUUCGUUc -3'
miRNA:   3'- ucCGGCuGCu-CCGGUUGCCG--AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 128262 0.67 0.85531
Target:  5'- uAGGCCGugGuGGgCAGCGcGUUgcggauggUGUCg -3'
miRNA:   3'- -UCCGGCugCuCCgGUUGC-CGAa-------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 45307 0.67 0.85531
Target:  5'- aGGaGCCGGagccCGAgcuGGCCGACGGCUaCGa- -3'
miRNA:   3'- -UC-CGGCU----GCU---CCGGUUGCCGAaGCag -5'
13975 3' -58.8 NC_003521.1 + 210900 0.72 0.553251
Target:  5'- uGGCCGuCGccAGGCCcuuGACGGCcacgggUCGUCg -3'
miRNA:   3'- uCCGGCuGC--UCCGG---UUGCCGa-----AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 53182 0.72 0.553251
Target:  5'- -cGCCGAUGAagauGGCCAGCGGCgcgCGg- -3'
miRNA:   3'- ucCGGCUGCU----CCGGUUGCCGaa-GCag -5'
13975 3' -58.8 NC_003521.1 + 30205 0.67 0.840116
Target:  5'- aAGGCCGAcucCGAgaucGGCCGGCcGUUggCGUCg -3'
miRNA:   3'- -UCCGGCU---GCU----CCGGUUGcCGAa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 103832 0.69 0.745754
Target:  5'- uGGCUGuACaGGGGCCGcgucuCGGCcUCGUCc -3'
miRNA:   3'- uCCGGC-UG-CUCCGGUu----GCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 125793 0.69 0.727116
Target:  5'- cGGCCuGCGAGGcCCAGgGGUUgugCGUg -3'
miRNA:   3'- uCCGGcUGCUCC-GGUUgCCGAa--GCAg -5'
13975 3' -58.8 NC_003521.1 + 153444 0.69 0.727116
Target:  5'- cGGUCGcgcuCGuAGGCCAGCGGCU-CG-Ca -3'
miRNA:   3'- uCCGGCu---GC-UCCGGUUGCCGAaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 35972 0.69 0.727116
Target:  5'- uGGgCGACGAGGaCGACgaaccgGGCUUgGUCa -3'
miRNA:   3'- uCCgGCUGCUCCgGUUG------CCGAAgCAG- -5'
13975 3' -58.8 NC_003521.1 + 32296 0.69 0.726176
Target:  5'- cGGCCGAauGGGCCAgacagcuGCGGCgcaCGUa -3'
miRNA:   3'- uCCGGCUgcUCCGGU-------UGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 16688 0.69 0.764029
Target:  5'- uGGcCCGACucGGCCcACGGCcuggacaUCGUCg -3'
miRNA:   3'- uCC-GGCUGcuCCGGuUGCCGa------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 88063 0.67 0.85531
Target:  5'- gAGGUCG-CGGuGGUCGGCGGCgccCGUg -3'
miRNA:   3'- -UCCGGCuGCU-CCGGUUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 207058 0.67 0.85531
Target:  5'- cAGGCCGgagGCGuugcaGGGCaggaGACGGCUgaccUGUCg -3'
miRNA:   3'- -UCCGGC---UGC-----UCCGg---UUGCCGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 163710 0.67 0.840116
Target:  5'- cGGCC-ACGAGGCCGAaucCUgCGUCg -3'
miRNA:   3'- uCCGGcUGCUCCGGUUgccGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 169007 0.67 0.840116
Target:  5'- cGGgCGACGGGGCCGgcacgaucuugACGuGCgugaCGUCc -3'
miRNA:   3'- uCCgGCUGCUCCGGU-----------UGC-CGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 221817 0.67 0.840116
Target:  5'- -cGUCGGCGGGGCgGGCGuGuCUcccUCGUCg -3'
miRNA:   3'- ucCGGCUGCUCCGgUUGC-C-GA---AGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.