miRNA display CGI


Results 121 - 140 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 78802 0.67 0.824234
Target:  5'- cAGGUCGACGAgcGGCCcuggUGGCgccagUCGUa -3'
miRNA:   3'- -UCCGGCUGCU--CCGGuu--GCCGa----AGCAg -5'
13975 3' -58.8 NC_003521.1 + 86197 0.67 0.832258
Target:  5'- cGGGCCacgGugGAGGCgAAgGGCggCGg- -3'
miRNA:   3'- -UCCGG---CugCUCCGgUUgCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 221817 0.67 0.840116
Target:  5'- -cGUCGGCGGGGCgGGCGuGuCUcccUCGUCg -3'
miRNA:   3'- ucCGGCUGCUCCGgUUGC-C-GA---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 118921 0.67 0.832258
Target:  5'- cGGCgccgCGGCGuGGgCGGCGGCguccCGUCa -3'
miRNA:   3'- uCCG----GCUGCuCCgGUUGCCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 88661 0.67 0.840116
Target:  5'- aGGGCCGccagguCGguGGGCCGGCGGCccggcUCGg- -3'
miRNA:   3'- -UCCGGCu-----GC--UCCGGUUGCCGa----AGCag -5'
13975 3' -58.8 NC_003521.1 + 130289 0.67 0.840116
Target:  5'- cGGCUaccugGGCGAGGCCG-CGGCgccgCG-Ca -3'
miRNA:   3'- uCCGG-----CUGCUCCGGUuGCCGaa--GCaG- -5'
13975 3' -58.8 NC_003521.1 + 163710 0.67 0.840116
Target:  5'- cGGCC-ACGAGGCCGAaucCUgCGUCg -3'
miRNA:   3'- uCCGGcUGCUCCGGUUgccGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 81192 0.67 0.840116
Target:  5'- cAGGCCucGGCGAucugGGCCAAa-GCUUUGUUg -3'
miRNA:   3'- -UCCGG--CUGCU----CCGGUUgcCGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 207058 0.67 0.85531
Target:  5'- cAGGCCGgagGCGuugcaGGGCaggaGACGGCUgaccUGUCg -3'
miRNA:   3'- -UCCGGC---UGC-----UCCGg---UUGCCGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 75633 0.65 0.901857
Target:  5'- -cGCCGACGAugacgacGGCaaCAGCGGCgcaGUCc -3'
miRNA:   3'- ucCGGCUGCU-------CCG--GUUGCCGaagCAG- -5'
13975 3' -58.8 NC_003521.1 + 125793 0.69 0.727116
Target:  5'- cGGCCuGCGAGGcCCAGgGGUUgugCGUg -3'
miRNA:   3'- uCCGGcUGCUCC-GGUUgCCGAa--GCAg -5'
13975 3' -58.8 NC_003521.1 + 103832 0.69 0.745754
Target:  5'- uGGCUGuACaGGGGCCGcgucuCGGCcUCGUCc -3'
miRNA:   3'- uCCGGC-UG-CUCCGGUu----GCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 23012 0.69 0.75494
Target:  5'- cGGCaucCGAgGAGGCCAAUGGgacgcauauCUUCGUg -3'
miRNA:   3'- uCCG---GCUgCUCCGGUUGCC---------GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 16688 0.69 0.764029
Target:  5'- uGGcCCGACucGGCCcACGGCcuggacaUCGUCg -3'
miRNA:   3'- uCC-GGCUGcuCCGGuUGCCGa------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 100131 0.67 0.854568
Target:  5'- cGGCUGGCGguccugcgggaAGGCCGugGgGCUcuugaggUCGUUg -3'
miRNA:   3'- uCCGGCUGC-----------UCCGGUugC-CGA-------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 168532 0.67 0.847802
Target:  5'- cAGGCUGGC--GGCCAgcGCGGCggCGg- -3'
miRNA:   3'- -UCCGGCUGcuCCGGU--UGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 69860 0.67 0.840116
Target:  5'- -cGCCGAUGAGGCCGcCGcGCagCGcCa -3'
miRNA:   3'- ucCGGCUGCUCCGGUuGC-CGaaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 167331 0.66 0.896334
Target:  5'- cGGGUCGAgGAGGagcuCGGCcUCGUa -3'
miRNA:   3'- -UCCGGCUgCUCCgguuGCCGaAGCAg -5'
13975 3' -58.8 NC_003521.1 + 191657 0.66 0.896334
Target:  5'- gGGGUgugugaguugCGAUGAGGUCGccgaggACGGCgaggCGUCu -3'
miRNA:   3'- -UCCG----------GCUGCUCCGGU------UGCCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 33143 0.66 0.896334
Target:  5'- -cGCCGAUGAcgaaGCCGuUGGCcUCGUCg -3'
miRNA:   3'- ucCGGCUGCUc---CGGUuGCCGaAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.