Results 81 - 100 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13975 | 5' | -57.8 | NC_003521.1 | + | 178973 | 0.66 | 0.896598 |
Target: 5'- aUGGAcAGGCGCCGCgguuccgcgGCGCCcUCc- -3' miRNA: 3'- gACCUcUUCGCGGCGa--------UGCGGcAGua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 183318 | 0.71 | 0.646031 |
Target: 5'- -cGuGAucAGCGCCGUgcGCGCCGUCAUg -3' miRNA: 3'- gaC-CUcuUCGCGGCGa-UGCGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 183908 | 0.76 | 0.386339 |
Target: 5'- gCUGGAGGcGGUGCUGCgGCGCUGUCGc -3' miRNA: 3'- -GACCUCU-UCGCGGCGaUGCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 185100 | 0.75 | 0.445505 |
Target: 5'- gCUGG-GAGGCGCUGC-GCGCCGaCAUg -3' miRNA: 3'- -GACCuCUUCGCGGCGaUGCGGCaGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 190554 | 0.68 | 0.823257 |
Target: 5'- --cGuGAAGCGCCGCUcguacuCGCCGUaCAUc -3' miRNA: 3'- gacCuCUUCGCGGCGAu-----GCGGCA-GUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 193155 | 0.66 | 0.890167 |
Target: 5'- aUGGcGGggGCGuCUGCUGCuGCUGUUg- -3' miRNA: 3'- gACC-UCuuCGC-GGCGAUG-CGGCAGua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 200317 | 0.73 | 0.528376 |
Target: 5'- gCUGGAGGAguucgagauGCGCUGCgGCGCCGUgGc -3' miRNA: 3'- -GACCUCUU---------CGCGGCGaUGCGGCAgUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 200462 | 0.67 | 0.862353 |
Target: 5'- gUGGAGAAG-GCCcuGCgcaGCGCCGUgAUc -3' miRNA: 3'- gACCUCUUCgCGG--CGa--UGCGGCAgUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 204743 | 0.66 | 0.914583 |
Target: 5'- gUGGugauGGAGGCGCCGC--CGCCGcCc- -3' miRNA: 3'- gACC----UCUUCGCGGCGauGCGGCaGua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 206606 | 0.66 | 0.890167 |
Target: 5'- -cGGcGAcacgGGCGCCGuCUACGCCGcCc- -3' miRNA: 3'- gaCCuCU----UCGCGGC-GAUGCGGCaGua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 207706 | 0.87 | 0.079143 |
Target: 5'- gCUGGAGAAgGC-CCGCUACGCCGUCAUc -3' miRNA: 3'- -GACCUCUU-CGcGGCGAUGCGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 209153 | 0.69 | 0.78901 |
Target: 5'- cCUGGAGAA-CGCCgaGCUGCGCCu---- -3' miRNA: 3'- -GACCUCUUcGCGG--CGAUGCGGcagua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 212727 | 0.68 | 0.814921 |
Target: 5'- uUGGGcGAGCGCCuGCUcggcuucccCGCCGUCGUc -3' miRNA: 3'- gACCUcUUCGCGG-CGAu--------GCGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 212816 | 0.7 | 0.685497 |
Target: 5'- gCUGGAGGaggacagcgaGGUGCCGCUcACGCUGcCGc -3' miRNA: 3'- -GACCUCU----------UCGCGGCGA-UGCGGCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 213719 | 0.66 | 0.908219 |
Target: 5'- -cGGGGAugcccagccagacGGCGCCGCagaAgGCCGUgGUg -3' miRNA: 3'- gaCCUCU-------------UCGCGGCGa--UgCGGCAgUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 218224 | 0.7 | 0.733833 |
Target: 5'- -cGGAGGucaGGCGaCCGCagGgGCCGUCAc -3' miRNA: 3'- gaCCUCU---UCGC-GGCGa-UgCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 220944 | 0.67 | 0.847257 |
Target: 5'- -aGGAucAGCGCCGacGCGgCCGUCAg -3' miRNA: 3'- gaCCUcuUCGCGGCgaUGC-GGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 223342 | 0.71 | 0.655932 |
Target: 5'- -cGGc--GGCGCCGCUACcgguGCCGUCGUc -3' miRNA: 3'- gaCCucuUCGCGGCGAUG----CGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 223942 | 0.66 | 0.896598 |
Target: 5'- -aGGGGGucgaGGCgGCCGCggggaACGCaCGUCGUa -3' miRNA: 3'- gaCCUCU----UCG-CGGCGa----UGCG-GCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 233726 | 0.68 | 0.797791 |
Target: 5'- cCUGGAGAAGgaggaCGCCGC--CGCCG-CGUc -3' miRNA: 3'- -GACCUCUUC-----GCGGCGauGCGGCaGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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