miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 165175 0.7 0.705014
Target:  5'- aUGGuGGGAcuGCGCCGCUGuugcCGUCGUCAUc -3'
miRNA:   3'- gACC-UCUU--CGCGGCGAU----GCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 206606 0.66 0.890167
Target:  5'- -cGGcGAcacgGGCGCCGuCUACGCCGcCc- -3'
miRNA:   3'- gaCCuCU----UCGCGGC-GAUGCGGCaGua -5'
13975 5' -57.8 NC_003521.1 + 172459 0.7 0.69528
Target:  5'- -aGGGGAGGCaggGCCgGCagcggUGCGCCGUCGg -3'
miRNA:   3'- gaCCUCUUCG---CGG-CG-----AUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 152629 0.69 0.743285
Target:  5'- cCUGGAGAAGgaccaccugaUGCUcaGCgACGCCGUCAc -3'
miRNA:   3'- -GACCUCUUC----------GCGG--CGaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 98135 0.69 0.78901
Target:  5'- -cGGAGuccguGGUaGCUGCUGcCGCCGUCGc -3'
miRNA:   3'- gaCCUCu----UCG-CGGCGAU-GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 18789 0.66 0.908809
Target:  5'- gUGGAGGgccAGCGCUGCUuucGCGUgGcCAa -3'
miRNA:   3'- gACCUCU---UCGCGGCGA---UGCGgCaGUa -5'
13975 5' -57.8 NC_003521.1 + 223942 0.66 0.896598
Target:  5'- -aGGGGGucgaGGCgGCCGCggggaACGCaCGUCGUa -3'
miRNA:   3'- gaCCUCU----UCG-CGGCGa----UGCG-GCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 204743 0.66 0.914583
Target:  5'- gUGGugauGGAGGCGCCGC--CGCCGcCc- -3'
miRNA:   3'- gACC----UCUUCGCGGCGauGCGGCaGua -5'
13975 5' -57.8 NC_003521.1 + 18921 0.66 0.883522
Target:  5'- -aGGGu-GGCGCCGC-GCGCCGgCAa -3'
miRNA:   3'- gaCCUcuUCGCGGCGaUGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 129426 0.67 0.862353
Target:  5'- aUGGGGGAGcCGCUGCaGCGCguccccucCGUCGc -3'
miRNA:   3'- gACCUCUUC-GCGGCGaUGCG--------GCAGUa -5'
13975 5' -57.8 NC_003521.1 + 77045 0.67 0.8549
Target:  5'- gUGGu--GGCGCCGCUAccguuguugcCGCCGcCGUg -3'
miRNA:   3'- gACCucuUCGCGGCGAU----------GCGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 103558 0.67 0.839432
Target:  5'- gCUGGGGcccccgcucuGC-CCGCUGcCGCCGUCGg -3'
miRNA:   3'- -GACCUCuu--------CGcGGCGAU-GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 155134 0.68 0.797791
Target:  5'- cCUGGAGAaccugcGGCGCgUGCUggACGCCGgcUCGg -3'
miRNA:   3'- -GACCUCU------UCGCG-GCGA--UGCGGC--AGUa -5'
13975 5' -57.8 NC_003521.1 + 178973 0.66 0.896598
Target:  5'- aUGGAcAGGCGCCGCgguuccgcgGCGCCcUCc- -3'
miRNA:   3'- gACCUcUUCGCGGCGa--------UGCGGcAGua -5'
13975 5' -57.8 NC_003521.1 + 220944 0.67 0.847257
Target:  5'- -aGGAucAGCGCCGacGCGgCCGUCAg -3'
miRNA:   3'- gaCCUcuUCGCGGCgaUGC-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 142641 0.67 0.852627
Target:  5'- -aGGAGAaccgcggccucagcGGuCGgCGCaGCGCCGUCAg -3'
miRNA:   3'- gaCCUCU--------------UC-GCgGCGaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 1483 0.72 0.596516
Target:  5'- aUGGGGAA-CGCCGCUACaCCGcCAUg -3'
miRNA:   3'- gACCUCUUcGCGGCGAUGcGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 167915 0.67 0.8549
Target:  5'- -aGGuGggGCGCCGCgauCGagggguaCGUCAg -3'
miRNA:   3'- gaCCuCuuCGCGGCGau-GCg------GCAGUa -5'
13975 5' -57.8 NC_003521.1 + 112193 0.69 0.780098
Target:  5'- uCUGGAGggGCGCguguccgaaGCggagGCGCUGcUCAa -3'
miRNA:   3'- -GACCUCuuCGCGg--------CGa---UGCGGC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 75980 0.69 0.78901
Target:  5'- --cGAGGAGCGgcccUCGCcggGCGCCGUCAg -3'
miRNA:   3'- gacCUCUUCGC----GGCGa--UGCGGCAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.