miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 54158 0.68 0.823257
Target:  5'- uUGGAGAGGcCGCCGCcucCGCCa---- -3'
miRNA:   3'- gACCUCUUC-GCGGCGau-GCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 75980 0.69 0.78901
Target:  5'- --cGAGGAGCGgcccUCGCcggGCGCCGUCAg -3'
miRNA:   3'- gacCUCUUCGC----GGCGa--UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 112193 0.69 0.780098
Target:  5'- uCUGGAGggGCGCguguccgaaGCggagGCGCUGcUCAa -3'
miRNA:   3'- -GACCUCuuCGCGg--------CGa---UGCGGC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 163949 0.69 0.771061
Target:  5'- -aGGAGGAGUcucgGCCGCggACGCCGa--- -3'
miRNA:   3'- gaCCUCUUCG----CGGCGa-UGCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 35789 0.69 0.760986
Target:  5'- -cGGAcGAaacggauccaucgGGCGUCGCggcACGCCGUCGUu -3'
miRNA:   3'- gaCCU-CU-------------UCGCGGCGa--UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 1483 0.72 0.596516
Target:  5'- aUGGGGAA-CGCCGCUACaCCGcCAUg -3'
miRNA:   3'- gACCUCUUcGCGGCGAUGcGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 133935 0.73 0.567046
Target:  5'- cCUGGuGGcgcuGCGCCGCUACuaCCGUCAc -3'
miRNA:   3'- -GACCuCUu---CGCGGCGAUGc-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 113847 0.67 0.839432
Target:  5'- gCUGGGGuuucuuccGAGCGUgGCggugguguaaGCGCCGUCAc -3'
miRNA:   3'- -GACCUC--------UUCGCGgCGa---------UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 141624 0.67 0.847257
Target:  5'- -aGGAcu-GCGCCGCg--GCCGUCAc -3'
miRNA:   3'- gaCCUcuuCGCGGCGaugCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 102593 0.66 0.914583
Target:  5'- -cGGGGcuGGCGCUgGCcACGUCGUCGUc -3'
miRNA:   3'- gaCCUCu-UCGCGG-CGaUGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 93728 0.66 0.914583
Target:  5'- -cGGAGAAaaGUCGCgugaGCCGUCGg -3'
miRNA:   3'- gaCCUCUUcgCGGCGaug-CGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 85561 0.66 0.908809
Target:  5'- -cGGGccuGAGGCGCCGC--CGCCGcCGc -3'
miRNA:   3'- gaCCU---CUUCGCGGCGauGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 74158 0.66 0.908809
Target:  5'- -cGGGGcccAGGUGCCGCUggccgacuGCGCCG-CGg -3'
miRNA:   3'- gaCCUC---UUCGCGGCGA--------UGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 102483 0.66 0.908809
Target:  5'- --aGAGAGGC-CCGagACGCCGUCGc -3'
miRNA:   3'- gacCUCUUCGcGGCgaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 213719 0.66 0.908219
Target:  5'- -cGGGGAugcccagccagacGGCGCCGCagaAgGCCGUgGUg -3'
miRNA:   3'- gaCCUCU-------------UCGCGGCGa--UgCGGCAgUA- -5'
13975 5' -57.8 NC_003521.1 + 175508 0.66 0.902813
Target:  5'- uCUGGuGAAGUGCCGCgu-GUgGUCu- -3'
miRNA:   3'- -GACCuCUUCGCGGCGaugCGgCAGua -5'
13975 5' -57.8 NC_003521.1 + 6237 0.66 0.890167
Target:  5'- aUGGAGAccGGCGCuccCGCggACGCCGa--- -3'
miRNA:   3'- gACCUCU--UCGCG---GCGa-UGCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 65371 0.67 0.8549
Target:  5'- -gGGAGAcggcGCGCCGCcgaucgUACGCCGagCAc -3'
miRNA:   3'- gaCCUCUu---CGCGGCG------AUGCGGCa-GUa -5'
13975 5' -57.8 NC_003521.1 + 142641 0.67 0.852627
Target:  5'- -aGGAGAaccgcggccucagcGGuCGgCGCaGCGCCGUCAg -3'
miRNA:   3'- gaCCUCU--------------UC-GCgGCGaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 220944 0.67 0.847257
Target:  5'- -aGGAucAGCGCCGacGCGgCCGUCAg -3'
miRNA:   3'- gaCCUcuUCGCGGCgaUGC-GGCAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.