Results 81 - 100 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13975 | 5' | -57.8 | NC_003521.1 | + | 5667 | 0.66 | 0.890167 |
Target: 5'- gUGGGGGgucgagacacgGGCGCCcguccGCggggaacggGCGCCGUCAc -3' miRNA: 3'- gACCUCU-----------UCGCGG-----CGa--------UGCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 6237 | 0.66 | 0.890167 |
Target: 5'- aUGGAGAccGGCGCuccCGCggACGCCGa--- -3' miRNA: 3'- gACCUCU--UCGCG---GCGa-UGCGGCagua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 175508 | 0.66 | 0.902813 |
Target: 5'- uCUGGuGAAGUGCCGCgu-GUgGUCu- -3' miRNA: 3'- -GACCuCUUCGCGGCGaugCGgCAGua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 213719 | 0.66 | 0.908219 |
Target: 5'- -cGGGGAugcccagccagacGGCGCCGCagaAgGCCGUgGUg -3' miRNA: 3'- gaCCUCU-------------UCGCGGCGa--UgCGGCAgUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 102483 | 0.66 | 0.908809 |
Target: 5'- --aGAGAGGC-CCGagACGCCGUCGc -3' miRNA: 3'- gacCUCUUCGcGGCgaUGCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 74158 | 0.66 | 0.908809 |
Target: 5'- -cGGGGcccAGGUGCCGCUggccgacuGCGCCG-CGg -3' miRNA: 3'- gaCCUC---UUCGCGGCGA--------UGCGGCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 85561 | 0.66 | 0.908809 |
Target: 5'- -cGGGccuGAGGCGCCGC--CGCCGcCGc -3' miRNA: 3'- gaCCU---CUUCGCGGCGauGCGGCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 93728 | 0.66 | 0.914583 |
Target: 5'- -cGGAGAAaaGUCGCgugaGCCGUCGg -3' miRNA: 3'- gaCCUCUUcgCGGCGaug-CGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 143173 | 0.67 | 0.876669 |
Target: 5'- gUGGGGGucggacccGGCGCCGCcGCGaaCGUCGa -3' miRNA: 3'- gACCUCU--------UCGCGGCGaUGCg-GCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 115067 | 0.67 | 0.876669 |
Target: 5'- -cGGAGAAGCccgacgucGCCcagaaacccuGCUccuGCGCCGUCGc -3' miRNA: 3'- gaCCUCUUCG--------CGG----------CGA---UGCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 35350 | 0.67 | 0.837845 |
Target: 5'- -aGGAGGAGUGCCGUcgucgaggaacgACGCCGa--- -3' miRNA: 3'- gaCCUCUUCGCGGCGa-----------UGCGGCagua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 113847 | 0.67 | 0.839432 |
Target: 5'- gCUGGGGuuucuuccGAGCGUgGCggugguguaaGCGCCGUCAc -3' miRNA: 3'- -GACCUC--------UUCGCGgCGa---------UGCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 141624 | 0.67 | 0.847257 |
Target: 5'- -aGGAcu-GCGCCGCg--GCCGUCAc -3' miRNA: 3'- gaCCUcuuCGCGGCGaugCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 220944 | 0.67 | 0.847257 |
Target: 5'- -aGGAucAGCGCCGacGCGgCCGUCAg -3' miRNA: 3'- gaCCUcuUCGCGGCgaUGC-GGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 142641 | 0.67 | 0.852627 |
Target: 5'- -aGGAGAaccgcggccucagcGGuCGgCGCaGCGCCGUCAg -3' miRNA: 3'- gaCCUCU--------------UC-GCgGCGaUGCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 65371 | 0.67 | 0.8549 |
Target: 5'- -gGGAGAcggcGCGCCGCcgaucgUACGCCGagCAc -3' miRNA: 3'- gaCCUCUu---CGCGGCG------AUGCGGCa-GUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 167915 | 0.67 | 0.8549 |
Target: 5'- -aGGuGggGCGCCGCgauCGagggguaCGUCAg -3' miRNA: 3'- gaCCuCuuCGCGGCGau-GCg------GCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 103887 | 0.67 | 0.8549 |
Target: 5'- -gGGGGAuGgGCUGCcGCGCgGUCAg -3' miRNA: 3'- gaCCUCUuCgCGGCGaUGCGgCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 67284 | 0.67 | 0.862353 |
Target: 5'- -gGGAGGAcaGCCGCUGCGCCu---- -3' miRNA: 3'- gaCCUCUUcgCGGCGAUGCGGcagua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 59409 | 0.67 | 0.869611 |
Target: 5'- cCUGGAGAAGUucgugGCaCGCgacagcgGCGCCGcCGc -3' miRNA: 3'- -GACCUCUUCG-----CG-GCGa------UGCGGCaGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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