Results 21 - 40 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13976 | 3' | -55.9 | NC_003521.1 | + | 131618 | 0.66 | 0.940138 |
Target: 5'- aGUGCGAGCUgaCGC-GCaacaUGCACa -3' miRNA: 3'- aCAUGCUCGAgaGCGuCGacg-ACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 88512 | 0.66 | 0.940138 |
Target: 5'- --cGCGcAGCgaCUCGCAGCcgUGCagGCGCa -3' miRNA: 3'- acaUGC-UCGa-GAGCGUCG--ACGa-CGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 84981 | 0.66 | 0.940138 |
Target: 5'- --aGCGAGCUCUgCGUacGGUU-CUGCGCc -3' miRNA: 3'- acaUGCUCGAGA-GCG--UCGAcGACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 221155 | 0.66 | 0.940138 |
Target: 5'- aGUugG-GCUCggcccagCGCAGCaGCcccagGCACa -3' miRNA: 3'- aCAugCuCGAGa------GCGUCGaCGa----CGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 156144 | 0.66 | 0.940138 |
Target: 5'- gUGUgcACGcAGCUgCUgGC-GCUGCUGCGa -3' miRNA: 3'- -ACA--UGC-UCGA-GAgCGuCGACGACGUg -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 137984 | 0.66 | 0.939672 |
Target: 5'- --cACGGGCgcccuggcgcgcuUCUCGCAGCgccgcuacuUGCUGC-Cg -3' miRNA: 3'- acaUGCUCG-------------AGAGCGUCG---------ACGACGuG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 110018 | 0.66 | 0.93538 |
Target: 5'- aUGUGCacccGGCUCUCGUGGgCgcGCUGCGg -3' miRNA: 3'- -ACAUGc---UCGAGAGCGUC-Ga-CGACGUg -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 88409 | 0.66 | 0.93538 |
Target: 5'- aGgcCGcGCUCUUGCacgaaGGC-GCUGCGCg -3' miRNA: 3'- aCauGCuCGAGAGCG-----UCGaCGACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 184663 | 0.66 | 0.93538 |
Target: 5'- -cUGCGuGUUCgcgCGCAGCgaGCaGCACg -3' miRNA: 3'- acAUGCuCGAGa--GCGUCGa-CGaCGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 211396 | 0.66 | 0.93538 |
Target: 5'- --gGCGccGGCUCUCguGCAGCaGCcgGCGCa -3' miRNA: 3'- acaUGC--UCGAGAG--CGUCGaCGa-CGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 116876 | 0.66 | 0.93538 |
Target: 5'- --cGCGcAGUgg-CGCGGCUGCggcgGCGCg -3' miRNA: 3'- acaUGC-UCGagaGCGUCGACGa---CGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 98815 | 0.66 | 0.93538 |
Target: 5'- cGU-CGAgGCg-UUGCAGCUGCUugGCGCg -3' miRNA: 3'- aCAuGCU-CGagAGCGUCGACGA--CGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 185273 | 0.66 | 0.933907 |
Target: 5'- --cGCGAGUgcuacuuccccucgUCggCGCGGCgcucGCUGCGCg -3' miRNA: 3'- acaUGCUCG--------------AGa-GCGUCGa---CGACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 112124 | 0.66 | 0.930389 |
Target: 5'- gGUGCGcaAGCgguaUCUgCGCgAGgaGCUGCGCg -3' miRNA: 3'- aCAUGC--UCG----AGA-GCG-UCgaCGACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 53436 | 0.66 | 0.930389 |
Target: 5'- gGUGCGgaGGCUgUUGCcGCUGCU-CACc -3' miRNA: 3'- aCAUGC--UCGAgAGCGuCGACGAcGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 104759 | 0.67 | 0.925164 |
Target: 5'- gUGgagAUGAGCg--CGCAGCcGCUGCcCa -3' miRNA: 3'- -ACa--UGCUCGagaGCGUCGaCGACGuG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 102767 | 0.67 | 0.925164 |
Target: 5'- gGUA-GAGCg---GCAGCgGCUGCGCg -3' miRNA: 3'- aCAUgCUCGagagCGUCGaCGACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 226185 | 0.67 | 0.925164 |
Target: 5'- ----aGGGCcagaCgcacUGCAGCUGCUGCACg -3' miRNA: 3'- acaugCUCGa---Ga---GCGUCGACGACGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 27095 | 0.67 | 0.919705 |
Target: 5'- aGUGCaGGCUCUCGaCGGCgcgcagGCcgGUGCg -3' miRNA: 3'- aCAUGcUCGAGAGC-GUCGa-----CGa-CGUG- -5' |
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13976 | 3' | -55.9 | NC_003521.1 | + | 128606 | 0.67 | 0.919705 |
Target: 5'- cGUcACGGcGUUCUCGgGGCUGa-GCACg -3' miRNA: 3'- aCA-UGCU-CGAGAGCgUCGACgaCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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