miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13977 3' -50.3 NC_003521.1 + 18445 0.66 0.998752
Target:  5'- -cGCGcGGCCUgugccgCUUCGACCGCGg-- -3'
miRNA:   3'- ccCGUuCUGGAa-----GAAGUUGGUGCagu -5'
13977 3' -50.3 NC_003521.1 + 184390 0.66 0.998752
Target:  5'- uGGGCcacGAGGCggcCUUCGACCGCGa-- -3'
miRNA:   3'- -CCCG---UUCUGgaaGAAGUUGGUGCagu -5'
13977 3' -50.3 NC_003521.1 + 6727 0.66 0.998752
Target:  5'- uGGuGCAGGGCCUgacgCAGCCAgCGcUCGc -3'
miRNA:   3'- -CC-CGUUCUGGAagaaGUUGGU-GC-AGU- -5'
13977 3' -50.3 NC_003521.1 + 191600 0.66 0.998752
Target:  5'- aGGGUAAGAugcccgucCCUUCgUgGACCGCGa-- -3'
miRNA:   3'- -CCCGUUCU--------GGAAGaAgUUGGUGCagu -5'
13977 3' -50.3 NC_003521.1 + 210630 0.66 0.998752
Target:  5'- cGGagucGGCCUUCUacgUCAACCGCGcgcUCAu -3'
miRNA:   3'- cCCguu-CUGGAAGA---AGUUGGUGC---AGU- -5'
13977 3' -50.3 NC_003521.1 + 106055 0.67 0.998498
Target:  5'- cGGCAAGACCcUCUacaUCuACCugGa-- -3'
miRNA:   3'- cCCGUUCUGGaAGA---AGuUGGugCagu -5'
13977 3' -50.3 NC_003521.1 + 68922 0.67 0.998498
Target:  5'- gGGGCGAGACaggagaagUUCUUUuuCCuaGCGUCu -3'
miRNA:   3'- -CCCGUUCUGg-------AAGAAGuuGG--UGCAGu -5'
13977 3' -50.3 NC_003521.1 + 35767 0.67 0.998498
Target:  5'- cGGGCAAccuGACCaccuuugUCUUCGACC-CGa-- -3'
miRNA:   3'- -CCCGUU---CUGGa------AGAAGUUGGuGCagu -5'
13977 3' -50.3 NC_003521.1 + 126451 0.67 0.998498
Target:  5'- cGGCGAGAUCUUgUaCAGCauggaggccaGCGUCAu -3'
miRNA:   3'- cCCGUUCUGGAAgAaGUUGg---------UGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 178704 0.67 0.998498
Target:  5'- aGGUAccagguGACCUUCUUCAcCCAUGgCGa -3'
miRNA:   3'- cCCGUu-----CUGGAAGAAGUuGGUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 129698 0.67 0.998498
Target:  5'- cGGGCGAGGacgcccgCUUCUgccggccgCGGCC-CGUCGa -3'
miRNA:   3'- -CCCGUUCUg------GAAGAa-------GUUGGuGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 81876 0.67 0.998203
Target:  5'- aGGGaGAGAUg----UCGACCACGUCAc -3'
miRNA:   3'- -CCCgUUCUGgaagaAGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 205419 0.67 0.997859
Target:  5'- -aGCAgaAGGCCUUCUgucgcgCGGCCcGCGUCc -3'
miRNA:   3'- ccCGU--UCUGGAAGAa-----GUUGG-UGCAGu -5'
13977 3' -50.3 NC_003521.1 + 174985 0.67 0.997859
Target:  5'- -uGCAGGGCCUUCUuggccgucUCGGCCugcuUGUCc -3'
miRNA:   3'- ccCGUUCUGGAAGA--------AGUUGGu---GCAGu -5'
13977 3' -50.3 NC_003521.1 + 226391 0.67 0.997859
Target:  5'- -cGCAGGGCCgugugC-ACCACGUCAc -3'
miRNA:   3'- ccCGUUCUGGaagaaGuUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 182146 0.67 0.997463
Target:  5'- aGGCAuGACCUcgCUgcUCAcCUGCGUCAu -3'
miRNA:   3'- cCCGUuCUGGAa-GA--AGUuGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 130297 0.67 0.997463
Target:  5'- uGGGCGAGGCCg----CGgcGCCGCG-CAu -3'
miRNA:   3'- -CCCGUUCUGGaagaaGU--UGGUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 174666 0.67 0.997007
Target:  5'- aGGC--GGCgUUC-UUAGCCACGUCAu -3'
miRNA:   3'- cCCGuuCUGgAAGaAGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 116289 0.67 0.997007
Target:  5'- uGGGgGGGACCUuucguccccuUCUUCcuCCGuCGUCu -3'
miRNA:   3'- -CCCgUUCUGGA----------AGAAGuuGGU-GCAGu -5'
13977 3' -50.3 NC_003521.1 + 103778 0.68 0.996485
Target:  5'- cGGGCGGuGCCUgagUCAGCCGCcgGUUAu -3'
miRNA:   3'- -CCCGUUcUGGAagaAGUUGGUG--CAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.