miRNA display CGI


Results 21 - 40 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13977 5' -60.5 NC_003521.1 + 118714 0.66 0.8628
Target:  5'- cGCGGCGa-GaCGCCG-CUGCaGCCGCa -3'
miRNA:   3'- cCGCUGUgcCcGCGGCaGAUG-CGGCG- -5'
13977 5' -60.5 NC_003521.1 + 131047 0.66 0.8628
Target:  5'- gGGCGGCgGCGGcGgGCC-UCUggACGCgGUg -3'
miRNA:   3'- -CCGCUG-UGCC-CgCGGcAGA--UGCGgCG- -5'
13977 5' -60.5 NC_003521.1 + 177273 0.66 0.8628
Target:  5'- aGGUGACGaGGGCGgcuCCGUg-ACGCUGg -3'
miRNA:   3'- -CCGCUGUgCCCGC---GGCAgaUGCGGCg -5'
13977 5' -60.5 NC_003521.1 + 240028 0.66 0.8628
Target:  5'- aGGCucGGCG-GGGCGCCGggcggucCUcCGCCGa -3'
miRNA:   3'- -CCG--CUGUgCCCGCGGCa------GAuGCGGCg -5'
13977 5' -60.5 NC_003521.1 + 145051 0.66 0.8628
Target:  5'- aGCGGCACGa-UGaCCGUCUGgGCgGCu -3'
miRNA:   3'- cCGCUGUGCccGC-GGCAGAUgCGgCG- -5'
13977 5' -60.5 NC_003521.1 + 233376 0.66 0.8628
Target:  5'- -aCGuccCGCGuGGUGCUGU--GCGCCGCg -3'
miRNA:   3'- ccGCu--GUGC-CCGCGGCAgaUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 74242 0.66 0.8628
Target:  5'- gGGCGuCACGGGCaucuacaaGCacuucuUCUGCGauCCGCa -3'
miRNA:   3'- -CCGCuGUGCCCG--------CGgc----AGAUGC--GGCG- -5'
13977 5' -60.5 NC_003521.1 + 71883 0.66 0.8628
Target:  5'- cGGCGACAgCGgcGGCcCUGcCUGCGCCc- -3'
miRNA:   3'- -CCGCUGU-GC--CCGcGGCaGAUGCGGcg -5'
13977 5' -60.5 NC_003521.1 + 31005 0.66 0.8628
Target:  5'- gGGCGACGacGGCGCCGgCgaggACGCguuCGUg -3'
miRNA:   3'- -CCGCUGUgcCCGCGGCaGa---UGCG---GCG- -5'
13977 5' -60.5 NC_003521.1 + 197472 0.66 0.8628
Target:  5'- uGGCGgauguucacGCGCGGcGgGCCGg--ACGgCGCg -3'
miRNA:   3'- -CCGC---------UGUGCC-CgCGGCagaUGCgGCG- -5'
13977 5' -60.5 NC_003521.1 + 64534 0.66 0.8628
Target:  5'- cGCGACgACGccgacGC-CCGUCUGCuGCUGCu -3'
miRNA:   3'- cCGCUG-UGCc----CGcGGCAGAUG-CGGCG- -5'
13977 5' -60.5 NC_003521.1 + 154297 0.66 0.8628
Target:  5'- gGGCGGCAC-GGCGuCCGgggCcgACGCgGg -3'
miRNA:   3'- -CCGCUGUGcCCGC-GGCa--Ga-UGCGgCg -5'
13977 5' -60.5 NC_003521.1 + 59428 0.66 0.8628
Target:  5'- cGCGACAgcGGCGCCGc---CGCCGg -3'
miRNA:   3'- cCGCUGUgcCCGCGGCagauGCGGCg -5'
13977 5' -60.5 NC_003521.1 + 134207 0.66 0.8628
Target:  5'- cGGagaaGCGCuGGUGCCG-CUugGCCGa -3'
miRNA:   3'- -CCgc--UGUGcCCGCGGCaGAugCGGCg -5'
13977 5' -60.5 NC_003521.1 + 117578 0.66 0.8628
Target:  5'- cGGCGucUACuGGGCGCgGcgCUAcgaccaccuacCGCCGCc -3'
miRNA:   3'- -CCGCu-GUG-CCCGCGgCa-GAU-----------GCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 150783 0.66 0.8628
Target:  5'- cGCGACgACGGGCgGgCG-Cga-GCCGCc -3'
miRNA:   3'- cCGCUG-UGCCCG-CgGCaGaugCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 115716 0.66 0.8628
Target:  5'- cGGCGGC-CGuGGUGCCcaucccgCaGCGCCuGCa -3'
miRNA:   3'- -CCGCUGuGC-CCGCGGca-----GaUGCGG-CG- -5'
13977 5' -60.5 NC_003521.1 + 48504 0.66 0.8628
Target:  5'- cGGUaccCAC-GGUGCCGcCgACGCCGCu -3'
miRNA:   3'- -CCGcu-GUGcCCGCGGCaGaUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 49329 0.66 0.8628
Target:  5'- -uCGACGucucUGGGaauGCCGUCUGCGCgUGUg -3'
miRNA:   3'- ccGCUGU----GCCCg--CGGCAGAUGCG-GCG- -5'
13977 5' -60.5 NC_003521.1 + 149313 0.66 0.8628
Target:  5'- -aCGACGCGGcCGCCGuggUCUcACGCCu- -3'
miRNA:   3'- ccGCUGUGCCcGCGGC---AGA-UGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.