miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 5' -54.2 NC_003521.1 + 149063 0.66 0.987318
Target:  5'- cUGGGCUucgaCGCGGcCGCGCUC--UCGCa -3'
miRNA:   3'- -ACCUGAua--GUGCU-GCGUGAGugGGCG- -5'
13978 5' -54.2 NC_003521.1 + 120569 0.66 0.987318
Target:  5'- uUGGG-UGUCgagGCGAUGCACggcgCGgCCGCc -3'
miRNA:   3'- -ACCUgAUAG---UGCUGCGUGa---GUgGGCG- -5'
13978 5' -54.2 NC_003521.1 + 29403 0.66 0.987318
Target:  5'- gUGGAgCUcguuUCACGAUGUGCgccggCugCUGCa -3'
miRNA:   3'- -ACCU-GAu---AGUGCUGCGUGa----GugGGCG- -5'
13978 5' -54.2 NC_003521.1 + 128013 0.66 0.987318
Target:  5'- cGGGggGUCGCGGCcgucccagaGCGCgUGCCCGUa -3'
miRNA:   3'- aCCUgaUAGUGCUG---------CGUGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 155259 0.66 0.987318
Target:  5'- gGGGCggcggcgGCGGCGC-CUCagGCCCGUc -3'
miRNA:   3'- aCCUGauag---UGCUGCGuGAG--UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 4603 0.66 0.987167
Target:  5'- cGGGCcg-CGCGGgGgAacaugacCUCACCCGCu -3'
miRNA:   3'- aCCUGauaGUGCUgCgU-------GAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 92006 0.66 0.987014
Target:  5'- aGGGCaggcgGUCGCcGCGCACgaugaacguccgCAgCCGCg -3'
miRNA:   3'- aCCUGa----UAGUGcUGCGUGa-----------GUgGGCG- -5'
13978 5' -54.2 NC_003521.1 + 16056 0.66 0.98639
Target:  5'- cGGGCgcugcugCAcaacugccggagcccCGACGCGCUggcCGCCUGCg -3'
miRNA:   3'- aCCUGaua----GU---------------GCUGCGUGA---GUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 202568 0.66 0.985743
Target:  5'- gGGGCUGcugaccCugGGcCGCGuCUCGcCCCGCc -3'
miRNA:   3'- aCCUGAUa-----GugCU-GCGU-GAGU-GGGCG- -5'
13978 5' -54.2 NC_003521.1 + 12080 0.66 0.985743
Target:  5'- -aGAUgcgCACGcCGCuGCUCACCaCGCa -3'
miRNA:   3'- acCUGauaGUGCuGCG-UGAGUGG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 118161 0.66 0.985743
Target:  5'- cUGGGCgccu-CGAuCGCGCUCcaggACCUGCu -3'
miRNA:   3'- -ACCUGauaguGCU-GCGUGAG----UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 205461 0.66 0.985743
Target:  5'- gGGACUcggcGUCguuccucgACGACgGCACUCcucCUCGCg -3'
miRNA:   3'- aCCUGA----UAG--------UGCUG-CGUGAGu--GGGCG- -5'
13978 5' -54.2 NC_003521.1 + 129686 0.66 0.985743
Target:  5'- aGGAgCUGU--CGACGgGCgaggaCGCCCGCu -3'
miRNA:   3'- aCCU-GAUAguGCUGCgUGa----GUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 167920 0.66 0.985743
Target:  5'- gGGugUGUU-CGGCGCuccaGCCCGUg -3'
miRNA:   3'- aCCugAUAGuGCUGCGugagUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 141569 0.66 0.985743
Target:  5'- cUGGACcucgcgCGCGACGaCGCgCGCaCCGUc -3'
miRNA:   3'- -ACCUGaua---GUGCUGC-GUGaGUG-GGCG- -5'
13978 5' -54.2 NC_003521.1 + 132452 0.66 0.985743
Target:  5'- gUGGGCUGUU-CGGCGCGuCcggUCAgCCGUc -3'
miRNA:   3'- -ACCUGAUAGuGCUGCGU-G---AGUgGGCG- -5'
13978 5' -54.2 NC_003521.1 + 22722 0.66 0.985578
Target:  5'- cGGGCUcuacgcccucaucGUCAcCGGCGcCGC-CGCCuCGCu -3'
miRNA:   3'- aCCUGA-------------UAGU-GCUGC-GUGaGUGG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 182133 0.66 0.985578
Target:  5'- aGGccgucucGCUAggCAUGAccuCGCuGCUCACCUGCg -3'
miRNA:   3'- aCC-------UGAUa-GUGCU---GCG-UGAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 76517 0.66 0.984023
Target:  5'- gGGACcg-CGCGACaccagggccuGCGCcgUCAgCCCGCg -3'
miRNA:   3'- aCCUGauaGUGCUG----------CGUG--AGU-GGGCG- -5'
13978 5' -54.2 NC_003521.1 + 138034 0.66 0.984023
Target:  5'- --cGCUG-C-CGGCGCACggggcugugggUCGCCCGCg -3'
miRNA:   3'- accUGAUaGuGCUGCGUG-----------AGUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.