Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13979 | 3' | -53 | NC_003521.1 | + | 5495 | 0.68 | 0.971221 |
Target: 5'- cCUUAGAucuGGCCGucuCGGCAGGAGUa-- -3' miRNA: 3'- -GAGUCUc--UCGGUu--GUCGUCCUCAagc -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 64338 | 0.68 | 0.971221 |
Target: 5'- -gCAGAuGAGCCAGCuGCAGGcccuGggCGc -3' miRNA: 3'- gaGUCU-CUCGGUUGuCGUCCu---CaaGC- -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 169975 | 0.68 | 0.971221 |
Target: 5'- cCUCcuGGGAGgCGGCGGCGGGGGa--- -3' miRNA: 3'- -GAGu-CUCUCgGUUGUCGUCCUCaagc -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 172860 | 0.68 | 0.968288 |
Target: 5'- uCUCGGAGucugaGGCCgAGCuGCAGGAGg--- -3' miRNA: 3'- -GAGUCUC-----UCGG-UUGuCGUCCUCaagc -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 208230 | 0.68 | 0.965149 |
Target: 5'- -aCAGAcaccaGAGCC-ACAGCAGGAGc--- -3' miRNA: 3'- gaGUCU-----CUCGGuUGUCGUCCUCaagc -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 168045 | 0.68 | 0.961797 |
Target: 5'- uCUUGGAGcugugccGCCGACGGCGGGuGcUCGa -3' miRNA: 3'- -GAGUCUCu------CGGUUGUCGUCCuCaAGC- -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 121678 | 0.68 | 0.961797 |
Target: 5'- cCUCGGAGGGCCGugAugcGCGGugagguauccGAGUUCc -3' miRNA: 3'- -GAGUCUCUCGGUugU---CGUC----------CUCAAGc -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 127079 | 0.69 | 0.958228 |
Target: 5'- gUCGGucAGCCGcCAGCAGGAacgUCGg -3' miRNA: 3'- gAGUCucUCGGUuGUCGUCCUca-AGC- -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 145891 | 0.69 | 0.954437 |
Target: 5'- ---cGAGGccGCCGGCGGCGGGAGcagCGg -3' miRNA: 3'- gaguCUCU--CGGUUGUCGUCCUCaa-GC- -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 174128 | 0.69 | 0.95042 |
Target: 5'- cCUCAGGGGGUC-GCAGCccAGGAGg--- -3' miRNA: 3'- -GAGUCUCUCGGuUGUCG--UCCUCaagc -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 219578 | 0.69 | 0.95042 |
Target: 5'- gCUguGuGGGGCuCGcCAGCAGGGGUUCu -3' miRNA: 3'- -GAguC-UCUCG-GUuGUCGUCCUCAAGc -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 198342 | 0.69 | 0.941695 |
Target: 5'- cCUguGAcGGGCCGugAGuCAGG-GUUCGg -3' miRNA: 3'- -GAguCU-CUCGGUugUC-GUCCuCAAGC- -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 89673 | 0.69 | 0.941695 |
Target: 5'- --aGGAGAGagGACAGCAGGAGg--- -3' miRNA: 3'- gagUCUCUCggUUGUCGUCCUCaagc -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 37532 | 0.7 | 0.926844 |
Target: 5'- gUCcuGGGGGUgGGCAGCGGGGGUcgCGg -3' miRNA: 3'- gAGu-CUCUCGgUUGUCGUCCUCAa-GC- -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 160116 | 0.71 | 0.897358 |
Target: 5'- uUCAGGGcGCUGgagcucuacucGCAGCAGGAGUUgCGu -3' miRNA: 3'- gAGUCUCuCGGU-----------UGUCGUCCUCAA-GC- -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 155599 | 0.71 | 0.883942 |
Target: 5'- ---cGAGAG-CAGCAGCAGGAGguggCGa -3' miRNA: 3'- gaguCUCUCgGUUGUCGUCCUCaa--GC- -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 6432 | 0.72 | 0.869639 |
Target: 5'- uUCGGGGGGCCGcugcgacaACAGCacGGGAGgagCGg -3' miRNA: 3'- gAGUCUCUCGGU--------UGUCG--UCCUCaa-GC- -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 66261 | 0.72 | 0.846611 |
Target: 5'- aCUUcGuGAGCCAacaGCAGCAGGAGggaggCGg -3' miRNA: 3'- -GAGuCuCUCGGU---UGUCGUCCUCaa---GC- -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 11966 | 0.72 | 0.838539 |
Target: 5'- gUCAGAGAGCCGAaacuCGGgGGGAGg--- -3' miRNA: 3'- gAGUCUCUCGGUU----GUCgUCCUCaagc -5' |
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13979 | 3' | -53 | NC_003521.1 | + | 107794 | 0.74 | 0.77725 |
Target: 5'- uCUCuGGGAGCCGACGGUgauuaGGGuGUUCc -3' miRNA: 3'- -GAGuCUCUCGGUUGUCG-----UCCuCAAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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