Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13979 | 5' | -61.4 | NC_003521.1 | + | 211058 | 0.69 | 0.5759 |
Target: 5'- -cUGAcCUCGUUcGUCGCUCGCGGCGa -3' miRNA: 3'- caGCUcGAGCGGaCGGCGAGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 135334 | 0.69 | 0.574947 |
Target: 5'- gGUCGGGCgggUUGCCUcccucccgcgcgcGCCGuCUCcGCGGCGg -3' miRNA: 3'- -CAGCUCG---AGCGGA-------------CGGC-GAG-CGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 12165 | 0.68 | 0.662428 |
Target: 5'- -gCGGGUg-GCUUGUCGCuaUCGCGGCGa -3' miRNA: 3'- caGCUCGagCGGACGGCG--AGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 36788 | 0.68 | 0.662428 |
Target: 5'- --aGGGCcacgCGCUgcggaGCCGCUCGCGGaCGg -3' miRNA: 3'- cagCUCGa---GCGGa----CGGCGAGCGUC-GC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 100888 | 0.68 | 0.662428 |
Target: 5'- -aCGAGCUgGCCUuccgGCCGUgccccgaggaGCAGCGc -3' miRNA: 3'- caGCUCGAgCGGA----CGGCGag--------CGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 216320 | 0.68 | 0.65281 |
Target: 5'- uGUCGGGaaaGag-GCCGCUCGUAGCGc -3' miRNA: 3'- -CAGCUCgagCggaCGGCGAGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 87943 | 0.68 | 0.643178 |
Target: 5'- -aCGAGCUgcgCGaCCUGCUGacacgcuacgcCUCGCGGCGc -3' miRNA: 3'- caGCUCGA---GC-GGACGGC-----------GAGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 45044 | 0.68 | 0.633538 |
Target: 5'- gGUCGAGa--GCCgcGCCGCUCGUgccaGGCa -3' miRNA: 3'- -CAGCUCgagCGGa-CGGCGAGCG----UCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 171637 | 0.68 | 0.65281 |
Target: 5'- cGUCGGGUaUGUCUaGCgCGC-CGCGGCGg -3' miRNA: 3'- -CAGCUCGaGCGGA-CG-GCGaGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 97627 | 0.68 | 0.672024 |
Target: 5'- cGUCGuGCUCagGCUcGaCGUUCGCGGCGg -3' miRNA: 3'- -CAGCuCGAG--CGGaCgGCGAGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 169296 | 0.68 | 0.662428 |
Target: 5'- -gCGGGCUCggugacgucgGCCggcGUCGgUCGCAGCGu -3' miRNA: 3'- caGCUCGAG----------CGGa--CGGCgAGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 196288 | 0.68 | 0.672024 |
Target: 5'- -gUGAGCgcgUGCCggGCCGCUugaugcuggccaUGCAGCGc -3' miRNA: 3'- caGCUCGa--GCGGa-CGGCGA------------GCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 95768 | 0.68 | 0.651848 |
Target: 5'- -cCGAGC-CGCCcagacggucaucgUGCCGCUCGgccacgcgacCAGCGc -3' miRNA: 3'- caGCUCGaGCGG-------------ACGGCGAGC----------GUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 225778 | 0.68 | 0.681591 |
Target: 5'- cUCGcGCUCGC--GCCGCUCGuCAGgGu -3' miRNA: 3'- cAGCuCGAGCGgaCGGCGAGC-GUCgC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 152340 | 0.68 | 0.678724 |
Target: 5'- uUCGGGCccgCGCCgacGCUGCUCuggggccggccgggGCGGCGc -3' miRNA: 3'- cAGCUCGa--GCGGa--CGGCGAG--------------CGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 192793 | 0.68 | 0.643178 |
Target: 5'- -aCGGGCUUGCCcuUGUcggauCGCUgGCAGCa -3' miRNA: 3'- caGCUCGAGCGG--ACG-----GCGAgCGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 193158 | 0.67 | 0.709105 |
Target: 5'- -gCGGGggCGUCUGCUGCUgcuguugCGCAGCu -3' miRNA: 3'- caGCUCgaGCGGACGGCGA-------GCGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 142560 | 0.67 | 0.727807 |
Target: 5'- uGUCGcccgccaGGCUCGCCgUGcCCGC-CGUGGCc -3' miRNA: 3'- -CAGC-------UCGAGCGG-AC-GGCGaGCGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 145874 | 0.67 | 0.728735 |
Target: 5'- -gCGGGCggCGCCgacgacgagGCCGC-CGgCGGCGg -3' miRNA: 3'- caGCUCGa-GCGGa--------CGGCGaGC-GUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 33097 | 0.67 | 0.710046 |
Target: 5'- -aCGGGCUCcaGCCaGCCGaugacggCGUAGCGg -3' miRNA: 3'- caGCUCGAG--CGGaCGGCga-----GCGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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