miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 198821 0.67 0.694923
Target:  5'- uGUCGuGC-CGCCguguUGCUGCUgcgaccuuaagaaggCGCGGCGg -3'
miRNA:   3'- -CAGCuCGaGCGG----ACGGCGA---------------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 110825 0.67 0.691122
Target:  5'- -cCGuuGCgCGCC-GCCGCcggCGCAGCGg -3'
miRNA:   3'- caGCu-CGaGCGGaCGGCGa--GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 116360 0.67 0.691122
Target:  5'- -gCGAGCgcggcggcgaaCGCgUGCCGC-CGCGGCc -3'
miRNA:   3'- caGCUCGa----------GCGgACGGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 153445 0.67 0.691122
Target:  5'- gGUCGcGCUCguagGCCaGCgGCUCGCAGg- -3'
miRNA:   3'- -CAGCuCGAG----CGGaCGgCGAGCGUCgc -5'
13979 5' -61.4 NC_003521.1 + 193158 0.67 0.709105
Target:  5'- -gCGGGggCGUCUGCUGCUgcuguugCGCAGCu -3'
miRNA:   3'- caGCUCgaGCGGACGGCGA-------GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 129825 0.67 0.728735
Target:  5'- -cUGGGC-CGCCUGCUGCUggggccCGUGGCc -3'
miRNA:   3'- caGCUCGaGCGGACGGCGA------GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 186933 0.67 0.728735
Target:  5'- -aCGAGCgCGUgaCUGUCGUUgCGCAGCa -3'
miRNA:   3'- caGCUCGaGCG--GACGGCGA-GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 142560 0.67 0.727807
Target:  5'- uGUCGcccgccaGGCUCGCCgUGcCCGC-CGUGGCc -3'
miRNA:   3'- -CAGC-------UCGAGCGG-AC-GGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 205927 0.67 0.710046
Target:  5'- uUCGAGggCGCCUGCgucuCGCugggcuggcccUCGCAGUGc -3'
miRNA:   3'- cAGCUCgaGCGGACG----GCG-----------AGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 88144 0.67 0.719424
Target:  5'- -cCGAGC-CGCUggagcgGCUGCUgaCGCAGCu -3'
miRNA:   3'- caGCUCGaGCGGa-----CGGCGA--GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 8335 0.67 0.728735
Target:  5'- cGUUGAGCUUgacgaaGCUgggGUagCGCUCGCAGCc -3'
miRNA:   3'- -CAGCUCGAG------CGGa--CG--GCGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 208660 0.67 0.737972
Target:  5'- uUCGAuggaacaacGCgggCGCCUuccGCCGCUUGguGCa -3'
miRNA:   3'- cAGCU---------CGa--GCGGA---CGGCGAGCguCGc -5'
13979 5' -61.4 NC_003521.1 + 135208 0.67 0.737972
Target:  5'- -cCGAGCaCGcCCUGCUGCagCGCcugAGCGg -3'
miRNA:   3'- caGCUCGaGC-GGACGGCGa-GCG---UCGC- -5'
13979 5' -61.4 NC_003521.1 + 157971 0.66 0.791408
Target:  5'- -aCGGcGCUgguagcgaCGCC-GCCGCcCGCGGCGa -3'
miRNA:   3'- caGCU-CGA--------GCGGaCGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 202300 0.66 0.791408
Target:  5'- uGUCGAGCUcCGCCggcccgacuucUGCUGCUggaacugcugcCGguGCu -3'
miRNA:   3'- -CAGCUCGA-GCGG-----------ACGGCGA-----------GCguCGc -5'
13979 5' -61.4 NC_003521.1 + 202534 0.66 0.791408
Target:  5'- -aCGAGCUCucgcaCCUGCUGCgCGcCGGCc -3'
miRNA:   3'- caGCUCGAGc----GGACGGCGaGC-GUCGc -5'
13979 5' -61.4 NC_003521.1 + 104682 0.66 0.791408
Target:  5'- --gGAGCUCGaggggGCCGUggGCGGCGu -3'
miRNA:   3'- cagCUCGAGCgga--CGGCGagCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 38915 0.66 0.791408
Target:  5'- uUCGGaugccGC-CGCCUGCUGUUCGgucauCGGCGg -3'
miRNA:   3'- cAGCU-----CGaGCGGACGGCGAGC-----GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 109988 0.66 0.791408
Target:  5'- --aGGGCg-GCCUGCCGgUC-CAGCa -3'
miRNA:   3'- cagCUCGagCGGACGGCgAGcGUCGc -5'
13979 5' -61.4 NC_003521.1 + 138031 0.66 0.791408
Target:  5'- -cCGAGCUggcggcCGCCggcGCCGUcaucgCGCAGCc -3'
miRNA:   3'- caGCUCGA------GCGGa--CGGCGa----GCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.